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Papillomavirus vaccine compositions   

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Abstract: The present invention relates to pharmaceutical compositions comprising virus-like particles (VLPs) of HPV, said VLPs adsorbed to an aluminum adjuvant, and an ISCOM-type adjuvant comprising a saponin, cholesterol, and a phospholipid. In preferred embodiments, the aluminum adjuvant comprises amorphous aluminum hydroxyphosphate sulfate. Another aspect of the invention provides multi-dose HPV vaccine formulations comprising HPV VLPs and an antimicrobial preservative selected from the group consisting of: m-cresol, phenol and benzyl alcohol. Also provided are methods of using the disclosed pharmaceutical compositions and formulations to induce an immune response against HPV in a human patient and to prevent HPV infection. ...


USPTO Applicaton #: #20100189744 - Class: 4242041 (USPTO) - 07/29/10 - Class 424 
Related Terms: Cholesterol,   HPV Vaccine   Vaccine Formulations   
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The Patent Description & Claims data below is from USPTO Patent Application 20100189744, Papillomavirus vaccine compositions.

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US 20100189743 A1 20100729 1 177 1 1759 DNA Type A PWD circovirus CDS (1)..(78) CDS (82)..(99) CDS (106)..(156) CDS (160)..(195) CDS (199)..(231) CDS (235)..(246) CDS (250)..(315) CDS (319)..(330) CDS (334)..(489) CDS (493)..(525) CDS (529)..(591) CDS (595)..(600) CDS (604)..(606) CDS (610)..(627) CDS (634)..(636) CDS (640)..(681) CDS (685)..(708) CDS (712)..(726) CDS (730)..(753) CDS (757)..(933) CDS (937)..(969) CDS (973)..(1047) CDS (1051)..(1056) CDS (1060)..(1071) CDS (1075)..(1236) CDS (1240)..(1257) CDS (1261)..(1293) CDS (1297)..(1350) CDS (1354)..(1380) CDS (1384)..(1386) CDS (1390)..(1416) CDS (1420)..(1425) CDS (1429)..(1497) CDS (1501)..(1512) CDS (1516)..(1551) CDS (1555)..(1566) CDS (1570)..(1581) CDS (1585)..(1620) CDS (1624)..(1752) CDS (1756)..(1758) 1 acc agc gca ctt cgg cag cgg cag cac ctc ggc agc gtc agt gaa aat 48 Thr Ser Ala Leu Arg Gln Arg Gln His Leu Gly Ser Val Ser Glu Asn 1 5 10 15 gcc aag caa gaa aag cgg ccc gca acc cca taa gag gtg ggt gtt cac 96 Ala Lys Gln Glu Lys Arg Pro Ala Thr Pro Glu Val Gly Val His 20 25 30 cct taataa tcc ttc cga gga gga gaa aaa caa aat acg gga gct tcc 144 Pro Ser Phe Arg Gly Gly Glu Lys Gln Asn Thr Gly Ala Ser 35 40 45 aat ctc cct ttt tga tta ttt tgt ttg tgg cga gga agg ttt gga aga 192 Asn Leu Pro Phe Leu Phe Cys Leu Trp Arg Gly Arg Phe Gly Arg 50 55 60 ggg tag aac tcc tca cct cca ggg gtt tgc gaa ttt tgc taa gaa gca 240 Gly Asn Ser Ser Pro Pro Gly Val Cys Glu Phe Cys Glu Ala 65 70 gac ttt taa caa ggt gaa gtg gta ttt tgg tgc ccg ctg cca cat cga 288 Asp Phe Gln Gly Glu Val Val Phe Trp Cys Pro Leu Pro His Arg 75 80 85 gaa agc gaa agg aac cga cca gca gaa taa aga ata ctg cag taa aga 336 Glu Ser Glu Arg Asn Arg Pro Ala Glu Arg Ile Leu Gln Arg 90 95 100 agg cca cat act tat cga gtg tgg agc tcc gcg gaa cca ggg gaa gcg 384 Arg Pro His Thr Tyr Arg Val Trp Ser Ser Ala Glu Pro Gly Glu Ala 105 110 115 cag cga cct gtc tac tgc tgt gag tac cct ttt gga gac ggg gtc ttt 432 Gln Arg Pro Val Tyr Cys Cys Glu Tyr Pro Phe Gly Asp Gly Val Phe 120 125 130 135 ggt gac tgt agc cga gca gtt tcc tgt aac gta tgt gag aaa ttt ccg 480 Gly Asp Cys Ser Arg Ala Val Ser Cys Asn Val Cys Glu Lys Phe Pro 140 145 150 cgg gct ggc tga act ttt gaa agt gag cgg gaa gat gca gaa gcg tga 528 Arg Ala Gly Thr Phe Glu Ser Glu Arg Glu Asp Ala Glu Ala 155 160 165 ttg gaa gac agc tgt aca cgt cat agt ggg ccc gcc cgg ttg tgg gaa 576 Leu Glu Asp Ser Cys Thr Arg His Ser Gly Pro Ala Arg Leu Trp Glu 170 175 180 gag cca gtg ggc ccg taa ttt tgc tga gcc tag gga cac cta ctg gaa 624 Glu Pro Val Gly Pro Phe Cys Ala Gly His Leu Leu Glu 185 190 gcc tagtag aaa taa gtg gtg gga tgg ata tca tgg aga aga agt tgt 672 Ala Lys Val Val Gly Trp Ile Ser Trp Arg Arg Ser Cys 195 200 205 tgt ttt gga tga ttt tta tgg ctg gtt acc ttg gga tga tct act gag 720 Cys Phe Gly Phe Leu Trp Leu Val Thr Leu Gly Ser Thr Glu 210 215 220 act gtg tga ccg gta tcc att gac tgt aga gac taa agg ggg tac tgt 768 Thr Val Pro Val Ser Ile Asp Cys Arg Asp Arg Gly Tyr Cys 225 230 235 tcc ttt ttt ggc ccg cag tat ttt gat tac cag caa tca ggc ccc cca 816 Ser Phe Phe Gly Pro Gln Tyr Phe Asp Tyr Gln Gln Ser Gly Pro Pro 240 245 250 gga atg gta ctc ctc aac tgc tgt ccc agc tgt aga agc tct cta tcg 864 Gly Met Val Leu Leu Asn Cys Cys Pro Ser Cys Arg Ser Ser Leu Ser 255 260 265 gag gat tac tac ttt gca att ttg gaa gac tgc tgg aga aca atc cac 912 Glu Asp Tyr Tyr Phe Ala Ile Leu Glu Asp Cys Trp Arg Thr Ile His 270 275 280 gga ggt acc cga agg ccg att tga agc agt gga ccc acc ctg tgc cct 960 Gly Gly Thr Arg Arg Pro Ile Ser Ser Gly Pro Thr Leu Cys Pro 285 290 295 ttt ccc ata taa aat aaa tta ctg agt ctt ttt tgt tat cac atc gta 1008 Phe Pro Ile Asn Lys Leu Leu Ser Leu Phe Cys Tyr His Ile Val 300 305 310 atg gtt ttt att ttt att cat tta gag ggt ctt tca gga taa att ctc 1056 Met Val Phe Ile Phe Ile His Leu Glu Gly Leu Ser Gly Ile Leu 315 320 325 tga att gta cat aaa tag tca acc tta cca cat aat ttt ggg ctg tgg 1104 Ile Val His Lys Ser Thr Leu Pro His Asn Phe Gly Leu Trp 330 335 340 ttg cat ttt gga gcg cat agc cca ggc ctg tgt gct cga cat tgg tgt 1152 Leu His Phe Gly Ala His Ser Pro Gly Leu Cys Ala Arg His Trp Cys 345 350 355 ggg tat tta aat gga gcc aca gct ggt ttc ttt tat tat ttg gct gga 1200 Gly Tyr Leu Asn Gly Ala Thr Ala Gly Phe Phe Tyr Tyr Leu Ala Gly 360 365 370 acc aat caa ttg ttt ggt cta gct ctg gtt tgg ggg tga agt acc tgg 1248 Thr Asn Gln Leu Phe Gly Leu Ala Leu Val Trp Gly Ser Thr Trp 375 380 385 agt ggt agg taa agg gct gcc tta tgg tgt ggc ggg agg agt agt taa 1296 Ser Gly Arg Arg Ala Ala Leu Trp Cys Gly Gly Arg Ser Ser 390 395 400 tat agg ggt cat agg cca agt tgg tgg agg ggg tta caa agt tgg cat 1344 Tyr Arg Gly His Arg Pro Ser Trp Trp Arg Gly Leu Gln Ser Trp His 405 410 415 cca aga taa caa cag tgg acc caa cac ctc ttt gat tag agg tga tgg 1392 Pro Arg Gln Gln Trp Thr Gln His Leu Phe Asp Arg Trp 420 425 430 ggt ctc tgg ggt aaa att cat att tag cct ttc taa tac ggt agt att 1440 Gly Leu Trp Gly Lys Ile His Ile Pro Phe Tyr Gly Ser Ile 435 440 445 gga aag gta ggg gta ggg ggt tgg tgc cgc ctg agg ggg gga gga act 1488 Gly Lys Val Gly Val Gly Gly Trp Cys Arg Leu Arg Gly Gly Gly Thr 450 455 460 ggc cga tgt tga atc tca gct cgt taa cat tcc aag atg gct gcg agt 1536 Gly Arg Cys Ile Ser Ala Arg His Ser Lys Met Ala Ala Ser 465 470 475 gtc ctc ctc tta tgg tga gta caa att ctc tag aaa ggc ggg aat tga 1584 Val Leu Leu Leu Trp Val Gln Ile Leu Lys Gly Gly Asn 480 485 aga tac ccg tct ttc ggc gcc atc tgt aac ggt ttc tga agg cgg ggt 1632 Arg Tyr Pro Ser Phe Gly Ala Ile Cys Asn Gly Phe Arg Arg Gly 490 495 500 gta cca aat atg gtc ttc tcc gga gga tgt ttc caa gat ggc tgc ggg 1680 Val Pro Asn Met Val Phe Ser Gly Gly Cys Phe Gln Asp Gly Cys Gly 505 510 515 520 ggc ggg tcc gtc ttc tgc ggt aac gcc tcc ttg gcc acg tca tcc tat 1728 Gly Gly Ser Val Phe Cys Gly Asn Ala Ser Leu Ala Thr Ser Ser Tyr 525 530 535 aaa agt gaa aga agt gcg ctg ctg tag tat t 1759 Lys Ser Glu Arg Ser Ala Leu Leu Tyr 540 545 2 545 PRT Type A PWD circovirus 2 Thr Ser Ala Leu Arg Gln Arg Gln His Leu Gly Ser Val Ser Glu Asn 1 5 10 15 Ala Lys Gln Glu Lys Arg Pro Ala Thr Pro Glu Val Gly Val His Pro 20 25 30 Ser Phe Arg Gly Gly Glu Lys Gln Asn Thr Gly Ala Ser Asn Leu Pro 35 40 45 Phe Leu Phe Cys Leu Trp Arg Gly Arg Phe Gly Arg Gly Asn Ser Ser 50 55 60 Pro Pro Gly Val Cys Glu Phe Cys Glu Ala Asp Phe Gln Gly Glu Val 65 70 75 80 Val Phe Trp Cys Pro Leu Pro His Arg Glu Ser Glu Arg Asn Arg Pro 85 90 95 Ala Glu Arg Ile Leu Gln Arg Arg Pro His Thr Tyr Arg Val Trp Ser 100 105 110 Ser Ala Glu Pro Gly Glu Ala Gln Arg Pro Val Tyr Cys Cys Glu Tyr 115 120 125 Pro Phe Gly Asp Gly Val Phe Gly Asp Cys Ser Arg Ala Val Ser Cys 130 135 140 Asn Val Cys Glu Lys Phe Pro Arg Ala Gly Thr Phe Glu Ser Glu Arg 145 150 155 160 Glu Asp Ala Glu Ala Leu Glu Asp Ser Cys Thr Arg His Ser Gly Pro 165 170 175 Ala Arg Leu Trp Glu Glu Pro Val Gly Pro Phe Cys Ala Gly His Leu 180 185 190 Leu Glu Ala Lys Val Val Gly Trp Ile Ser Trp Arg Arg Ser Cys Cys 195 200 205 Phe Gly Phe Leu Trp Leu Val Thr Leu Gly Ser Thr Glu Thr Val Pro 210 215 220 Val Ser Ile Asp Cys Arg Asp Arg Gly Tyr Cys Ser Phe Phe Gly Pro 225 230 235 240 Gln Tyr Phe Asp Tyr Gln Gln Ser Gly Pro Pro Gly Met Val Leu Leu 245 250 255 Asn Cys Cys Pro Ser Cys Arg Ser Ser Leu Ser Glu Asp Tyr Tyr Phe 260 265 270 Ala Ile Leu Glu Asp Cys Trp Arg Thr Ile His Gly Gly Thr Arg Arg 275 280 285 Pro Ile Ser Ser Gly Pro Thr Leu Cys Pro Phe Pro Ile Asn Lys Leu 290 295 300 Leu Ser Leu Phe Cys Tyr His Ile Val Met Val Phe Ile Phe Ile His 305 310 315 320 Leu Glu Gly Leu Ser Gly Ile Leu Ile Val His Lys Ser Thr Leu Pro 325 330 335 His Asn Phe Gly Leu Trp Leu His Phe Gly Ala His Ser Pro Gly Leu 340 345 350 Cys Ala Arg His Trp Cys Gly Tyr Leu Asn Gly Ala Thr Ala Gly Phe 355 360 365 Phe Tyr Tyr Leu Ala Gly Thr Asn Gln Leu Phe Gly Leu Ala Leu Val 370 375 380 Trp Gly Ser Thr Trp Ser Gly Arg Arg Ala Ala Leu Trp Cys Gly Gly 385 390 395 400 Arg Ser Ser Tyr Arg Gly His Arg Pro Ser Trp Trp Arg Gly Leu Gln 405 410 415 Ser Trp His Pro Arg Gln Gln Trp Thr Gln His Leu Phe Asp Arg Trp 420 425 430 Gly Leu Trp Gly Lys Ile His Ile Pro Phe Tyr Gly Ser Ile Gly Lys 435 440 445 Val Gly Val Gly Gly Trp Cys Arg Leu Arg Gly Gly Gly Thr Gly Arg 450 455 460 Cys Ile Ser Ala Arg His Ser Lys Met Ala Ala Ser Val Leu Leu Leu 465 470 475 480 Trp Val Gln Ile Leu Lys Gly Gly Asn Arg Tyr Pro Ser Phe Gly Ala 485 490 495 Ile Cys Asn Gly Phe Arg Arg Gly Val Pro Asn Met Val Phe Ser Gly 500 505 510 Gly Cys Phe Gln Asp Gly Cys Gly Gly Gly Ser Val Phe Cys Gly Asn 515 520 525 Ala Ser Leu Ala Thr Ser Ser Tyr Lys Ser Glu Arg Ser Ala Leu Leu 530 535 540 Tyr 545 3 577 PRT Type A PWD circovirus 3 Pro Ala His Phe Gly Ser Gly Ser Thr Ser Ala Ala Ser Val Lys Met 1 5 10 15 Pro Ser Lys Lys Ser Gly Pro Gln Pro His Lys Arg Trp Val Phe Thr 20 25 30 Leu Asn Asn Pro Ser Glu Glu Glu Lys Asn Lys Ile Arg Glu Leu Pro 35 40 45 Ile Ser Leu Phe Asp Tyr Phe Val Cys Gly Glu Glu Gly Leu Glu Glu 50 55 60 Gly Arg Thr Pro His Leu Gln Gly Phe Ala Asn Phe Ala Lys Lys Gln 65 70 75 80 Thr Phe Asn Lys Val Lys Trp Tyr Phe Gly Ala Arg Cys His Ile Glu 85 90 95 Lys Ala Lys Gly Thr Asp Gln Gln Asn Lys Glu Tyr Cys Ser Lys Glu 100 105 110 Gly His Ile Leu Ile Glu Cys Gly Ala Pro Arg Asn Gln Gly Lys Arg 115 120 125 Ser Asp Leu Ser Thr Ala Val Ser Thr Leu Leu Glu Thr Gly Ser Leu 130 135 140 Val Thr Val Ala Glu Gln Phe Pro Val Thr Tyr Val Arg Asn Phe Arg 145 150 155 160 Gly Leu Ala Glu Leu Leu Lys Val Ser Gly Lys Met Gln Lys Arg Asp 165 170 175 Trp Lys Thr Ala Val His Val Ile Val Gly Pro Pro Gly Cys Gly Lys 180 185 190 Ser Gln Trp Ala Arg Asn Phe Ala Glu Pro Arg Asp Thr Tyr Trp Lys 195 200 205 Pro Ser Arg Asn Lys Trp Trp Asp Gly Tyr His Gly Glu Glu Val Val 210 215 220 Val Leu Asp Asp Phe Tyr Gly Trp Leu Pro Trp Asp Asp Leu Leu Arg 225 230 235 240 Leu Cys Asp Arg Tyr Pro Leu Thr Val Glu Thr Lys Gly Gly Thr Val 245 250 255 Pro Phe Leu Ala Arg Ser Ile Leu Ile Thr Ser Asn Gln Ala Pro Gln 260 265 270 Glu Trp Tyr Ser Ser Thr Ala Val Pro Ala Val Glu Ala Leu Tyr Arg 275 280 285 Arg Ile Thr Thr Leu Gln Phe Trp Lys Thr Ala Gly Glu Gln Ser Thr 290 295 300 Glu Val Pro Glu Gly Arg Phe Glu Ala Val Asp Pro Pro Cys Ala Leu 305 310 315 320 Phe Pro Tyr Lys Ile Asn Tyr Val Phe Phe Val Ile Thr Ser Trp Phe 325 330 335 Leu Phe Leu Phe Ile Arg Val Phe Gln Asp Lys Phe Ser Glu Leu Tyr 340 345 350 Ile Asn Ser Gln Pro Tyr His Ile Ile Leu Gly Cys Gly Cys Ile Leu 355 360 365 Glu Arg Ile Ala Gln Ala Cys Val Leu Asp Ile Gly Val Gly Ile Met 370 375 380 Glu Pro Gln Leu Val Ser Phe Ile Ile Trp Leu Glu Pro Ile Asn Cys 385 390 395 400 Leu Val Leu Trp Phe Gly Gly Glu Val Pro Gly Val Val Gly Lys Gly 405 410 415 Leu Pro Tyr Gly Val Ala Gly Gly Val Val Asn Ile Gly Val Ile Gly 420 425 430 Gln Val Gly Gly Gly Gly Tyr Lys Val Gly Ile Gln Asp Asn Asn Ser 435 440 445 Gly Pro Asn Thr Ser Leu Ile Arg Gly Asp Gly Val Ser Gly Val Lys 450 455 460 Phe Ile Phe Ser Leu Ser Asn Thr Val Val Leu Glu Arg Gly Val Gly 465 470 475 480 Ala Ala Gly Gly Glu Glu Leu Ala Asp Val Glu Ser Gln Leu Val Asn 485 490 495 Ile Pro Arg Trp Leu Arg Val Ser Ser Ser Tyr Gly Glu Tyr Lys Phe 500 505 510 Ser Arg Lys Ala Gly Ile Glu Asp Thr Arg Leu Ser Ala Pro Ser Val 515 520 525 Thr Val Ser Glu Gly Gly Val Tyr Gln Ile Trp Ser Ser Pro Glu Asp 530 535 540 Val Ser Lys Met Ala Ala Gly Ala Gly Pro Ser Ser Ala Val Thr Pro 545 550 555 560 Pro Trp Pro Arg His Pro Ile Lys Val Lys Glu Val Arg Cys Cys Ser 565 570 575 Ile 4 553 PRT Type A PWD circovirus 4 Gln Arg Thr Ser Ala Ala Ala Ala Pro Arg Gln Arg Gln Lys Cys Gln 1 5 10 15 Ala Arg Lys Ala Ala Arg Asn Pro Ile Arg Gly Gly Cys Ser Pro Leu 20 25 30 Leu Pro Arg Arg Arg Lys Thr Lys Tyr Gly Ser Phe Gln Ser Pro Phe 35 40 45 Leu Ile Ile Leu Phe Val Ala Arg Lys Val Trp Lys Arg Val Glu Leu 50 55 60 Leu Thr Ser Arg Gly Leu Arg Ile Leu Leu Arg Ser Arg Leu Leu Thr 65 70 75 80 Arg Ser Gly Ile Leu Val Pro Ala Ala Thr Ser Arg Lys Arg Lys Glu 85 90 95 Pro Thr Ser Arg Ile Lys Asn Thr Ala Val Lys Lys Ala Thr Tyr Leu 100 105 110 Ser Ser Val Glu Leu Arg Gly Thr Arg Gly Ser Ala Ala Thr Cys Leu 115 120 125 Leu Leu Val Pro Phe Trp Arg Arg Gly Leu Trp Leu Pro Ser Ser Phe 130 135 140 Leu Arg Met Glu Ile Ser Ala Gly Trp Leu Asn Phe Lys Ala Gly Arg 145 150 155 160 Cys Arg Ser Val Ile Gly Arg Gln Leu Tyr Thr Ser Trp Ala Arg Pro 165 170 175 Val Val Gly Arg Ala Ser Gly Pro Val Ile Leu Leu Ser Leu Gly Thr 180 185 190 Pro Thr Gly Ser Leu Val Glu Ile Ser Gly Gly Met Asp Ile Met Glu 195 200 205 Lys Lys Leu Leu Phe Trp Met Ile Phe Met Ala Gly Tyr Leu Gly Met 210 215 220 Ile Tyr Asp Cys Val Thr Gly Ile His Leu Arg Leu Lys Gly Val Leu 225 230 235 240 Phe Leu Phe Trp Pro Ala Val Phe Leu Pro Ala Ile Arg Pro Pro Arg 245 250 255 Asn Gly Thr Pro Gln Leu Leu Ser Gln Leu Lys Leu Ser Ile Gly Gly 260 265 270 Leu Leu Leu Cys Asn Phe Gly Arg Leu Leu Glu Asn Asn Pro Arg Arg 275 280 285 Tyr Pro Lys Ala Asp Leu Lys Gln Trp Thr His Pro Val Pro Phe Ser 290 295 300 His Ile Lys Ile Thr Glu Ser Phe Leu Leu Ser His Arg Asn Gly Phe 305 310 315 320 Tyr Phe Tyr Ser Phe Arg Gly Ser Phe Arg Ile Asn Ser Leu Asn Cys 325 330 335 Thr Ile Val Asn Leu Thr Thr Phe Trp Ala Val Val Ala Phe Trp Ser 340 345 350 Ala Pro Arg Pro Val Cys Ser Thr Leu Val Trp Val Phe Lys Trp Ser 355 360 365 His Ser Trp Phe Leu Leu Leu Phe Gly Trp Asn Gln Ser Ile Val Trp 370 375 380 Ser Ser Ser Gly Leu Gly Val Lys Tyr Leu Glu Trp Val Lys Gly Cys 385 390 395 400 Leu Met Val Trp Arg Glu Glu Leu Ile Gly Ser Ala Lys Leu Val Glu 405 410 415 Gly Val Thr Lys Leu Ala Ser Lys Ile Thr Thr Val Asp Pro Thr Pro 420 425 430 Leu Leu Glu Val Met Gly Ser Leu Gly Asn Ser Tyr Leu Ala Phe Leu 435 440 445 Ile Arg Tyr Trp Lys Gly Arg Gly Arg Gly Leu Val Pro Pro Glu Gly 450 455 460 Gly Arg Asn Trp Pro Met Leu Asn Leu Ser Ser Leu Thr Phe Gln Asp 465 470 475 480 Gly Cys Glu Cys Pro Pro Leu Met Val Ser Thr Asn Ser Leu Glu Arg 485 490 495 Arg Glu Leu Lys Ile Pro Val Phe Arg Arg His Leu Arg Phe Leu Lys 500 505 510 Ala Gly Cys Thr Lys Tyr Gly Leu Leu Arg Arg Met Phe Pro Arg Trp 515 520 525 Leu Arg Gly Arg Val Arg Leu Leu Arg Arg Leu Leu Gly His Val Ile 530 535 540 Leu Lys Lys Lys Cys Ala Ala Val Val 545 550 5 1759 DNA Type A PWD circovirus 5 aatactacag cagcgcactt ctttcacttt tataggatga cgtggccaag gaggcgttac 60 cgcagaagac ggacccgccc ccgcagccat cttggaaacg tcctccggag aagaccatat 120 ttggtacacc ccgccttcag aaaccgttac agatggcgcc gaaagacggg tatcttcaat 180 tcccgccttt ctagagaatt tgtactcacc ataagaggag gacactcgca gccatcttgg 240 aatgttaacg agctgagatt caacatcggc cagttcctcc ccccctcagg cggcaccaac 300 cccctacccc tacctttcca atactaccgt attagaaagg ctaaatatga attttacccc 360 agagacccca tcacctctaa tcaaagaggt gttgggtcca ctgttgttat cttggatgcc 420 aactttgtaa ccccctccac caacttggcc tatgacccct atattaacta ctcctcccgc 480 cacaccataa ggcagccctt tacctaccac tccaggtact tcacccccaa accagagcta 540 gaccaaacaa ttgattggtt ccagccaaat aataaaagaa accagctgtg gctccattta 600 aatacccaca ccaatgtcga gcacacaggc ctgggctatg cgctccaaaa tgcaaccaca 660 gcccaaaatt atgtggtaag gttgactatt tatgtacaat tcagagaatt tatcctgaaa 720 gaccctctaa atgaataaaa ataaaaacca ttacgatgtg ataacaaaaa agactcagta 780 atttatttta tatgggaaaa gggcacaggg tgggtccact gcttcaaatc ggccttcggg 840 tacctccgtg gattgttctc cagcagtctt ccaaaattgc aaagtagtaa tcctccgata 900 gagagcttct acagctggga cagcagttga ggagtaccat tcctgggggg cctgattgct 960 ggtaatcaaa atactgcggg ccaaaaaagg aacagtaccc cctttagtct ctacagtcaa 1020 tggataccgg tcacacagtc tcagtagatc atcccaaggt aaccagccat aaaaatcatc 1080 caaaacaaca acttcttctc catgatatcc atcccaccac ttatttctac taggcttcca 1140 gtaggtgtcc ctaggctcag caaaattacg ggcccactgg ctcttcccac aaccgggcgg 1200 gcccactatg acgtgtacag ctgtcttcca atcacgctgc tgcatcttcc cgctcacttt 1260 caaaagttca gccagcccgc ggaaatttct cacatacgtt acaggaaact gctcggctac 1320 agtcaccaaa gaccccgtct ccaaaagggt actcacagca gtagacaggt cgctgcgctt 1380 cccctggttc cgcggagctc cacactcgat aagtatgtgg ccttctttac tgcagtattc 1440 tttattctgc tggtcggttc ctttcgcttt ctcgatgtgg cagcgggcac caaaatacca 1500 cttcaccttg ttaaaagtct gcttcttagc aaaattcgca aacccctgga ggtgaggagt 1560 tctaccctct tccaaacctt cctcgccaca aacaaaataa tcaaaaaggg agattggaag 1620 ctcccgtatt ttgtttttct cctcctcgga aggattatta agggtgaaca cccacctctt 1680 atggggttgc gggccgcttt tcttgcttgg cattttcact gacgctgccg aggtgctgcc 1740 gctgccgaag tgcgctggt 1759 6 567 PRT Type A PWD circovirus 6 Gly Ala Cys Lys Pro Leu Pro Leu Val Glu Ala Ala Asp Thr Phe Ile 1 5 10 15 Gly Leu Leu Phe Leu Pro Gly Cys Gly Trp Leu Leu His Thr Asn Val 20 25 30 Arg Leu Leu Gly Glu Ser Ser Ser Phe Phe Leu Ile Arg Ser Ser Gly 35 40 45 Ile Glu Arg Lys Ser Lys Thr Gln Pro Ser Ser Pro Lys Ser Ser Pro 50 55 60 Leu Val Gly Arg Trp Pro Asn Ala Phe Lys Ala Leu Phe Cys Val Lys 65 70 75 80 Leu Leu Thr Phe His Tyr Lys Pro Ala Arg Gln Trp Met Ser Phe Ala 85 90 95 Phe Pro Val Ser Trp Cys Phe Leu Ser Tyr Gln Leu Leu Ser Pro Trp 100 105 110 Met Ser Ile Ser His Pro Ala Gly Arg Phe Trp Pro Phe Arg Leu Ser 115 120 125 Arg Asp Val Ala Thr Leu Val Arg Lys Ser Val Pro Asp Lys Thr Val 130 135 140 Thr Ala Ser Cys Asn Gly Thr Val Tyr Thr Leu Phe Lys Arg Pro Ser 145 150 155 160 Ala Ser Ser Lys Phe Thr Leu Pro Phe Ile Cys Cys Arg Ser Gln Phe 165 170 175 Val Ala Thr Cys Thr Met Thr Pro Gly Gly Pro Gln Pro Phe Leu Trp 180 185 190 His Ala Arg Leu Lys Ala Ser Gly Leu Ser Val Gln Phe Gly Leu Leu 195 200 205 Phe Leu His His Ser Pro Tyr Pro Ser Ser Thr Thr Thr Lys Ser Ser 210 215 220 Lys Pro Gln Asn Gly Gln Ser Ser Arg Ser Leu Ser His Ser Arg Tyr 225 230 235 240 Gly Asn Val Thr Ser Val Leu Pro Pro Val Thr Gly Lys Lys Ala Arg 245 250 255 Leu Ile Lys Ile Val Leu Leu Ala Gly Trp Ser His Tyr Glu Glu Val 260 265 270 Ala Thr Gly Ala Thr Ser Ala Arg Arg Leu Ile Val Val Lys Cys Asn 275 280 285 Gln Phe Val Ala Pro Ser Cys Asp Val Ser Thr Gly Ser Pro Arg Asn 290 295 300 Ser Ala Thr Ser Gly Gly Gln Ala Arg Lys Gly Tyr Leu Ile Phe Gln 305 310 315 320 Thr Lys Lys Thr Ile Val Asp Tyr His Asn Lys Asn Lys Asn Met Leu 325 330 335 Thr Lys Ser Leu Asn Glu Ser Asn Tyr Met Phe Leu Gly Trp Met Ile 340 345 350 Lys Pro Gln Pro Gln Met Lys Ser Arg Met Ala Trp Ala Gln Thr Ser 355 360 365 Ser Met Pro Thr Pro Ile Ile Ser Gly Cys Ser Thr Glu Lys Ile Ile 370 375 380 Gln Ser Ser Gly Ile Leu Gln Lys Thr Ser Gln Asn Pro Pro Ser Thr 385 390 395 400 Gly Pro Thr Thr Pro Leu Pro Ser Gly Pro Thr Ala Pro Pro Thr Thr 405 410 415 Leu Ile Pro Thr Met Pro Trp Thr Pro Pro Pro Pro Leu Thr Pro Met 420 425 430 Trp Ser Leu Leu Leu Pro Gly Leu Val Glu Lys Ile Leu Pro Ser Pro 435 440 445 Thr Glu Pro Thr Phe Asn Met Asn Leu Arg Glu Leu Val Thr Thr Asn 450 455 460 Ser Leu Tyr Pro Tyr Pro Thr Pro Ala Ala Gln Pro Pro Ser Ser Ser 465 470 475 480 Ala Ser Thr Ser Asp Ser Thr Leu Met Gly Leu His Ser Arg Thr Asp 485 490 495 Glu Glu Pro Ser Tyr Leu Asn Glu Leu Phe Ala Pro Ile Ser Ser Val 500 505 510 Arg Arg Glu Ala Gly Asp Thr Val Thr Glu Ser Pro Pro Thr Tyr Trp 515 520 525 Ile His Asp Glu Gly Ser Ser Thr Glu Leu Ile Ala Ala Pro Ala Pro 530 535 540 Gly Asp Glu Ala Thr Val Gly Gly Gln Gly Arg Gly Ile Phe Thr Phe 545 550 555 560 Ser Thr Arg Gln Gln Leu Ile 565 7 580 PRT Type A PWD circovirus 7 Trp Arg Val Glu Ala Ala Ala Ala Gly Arg Cys Arg His Phe His Trp 1 5 10 15 Ala Leu Phe Ala Ala Arg Leu Gly Met Leu Pro Pro His Glu Gly Lys 20 25 30 Ile Ile Arg Gly Leu Leu Leu Phe Val Phe Tyr Pro Leu Lys Trp Asp 35 40 45 Gly Lys Lys Ile Ile Lys Asn Thr Ala Leu Phe Thr Gln Phe Leu Thr 50 55 60 Ser Ser Arg Val Glu Leu Pro Lys Arg Ile Lys Ser Leu Leu Leu Ser 65 70 75 80 Lys Val Leu His Leu Pro Ile Lys Thr Gly Ala Ala Val Asp Leu Phe 85 90 95 Arg Phe Ser Gly Val Leu Leu Ile Phe Phe Val Ala Thr Phe Phe Ala 100 105 110 Val Tyr Lys Asp Leu Thr Ser Ser Arg Pro Val Leu Pro Leu Ala Ala 115 120 125 Val Gln Arg Ser Ser His Thr Gly Lys Gln Leu Arg Pro Arg Gln His 130 135 140 Ser Tyr Gly Leu Leu Lys Arg Tyr Arg Ile His Ser Ile Glu Ala Pro 145 150 155 160 Gln Ser Phe Lys Gln Phe His Ala Pro Leu His Leu Leu Thr Ile Pro 165 170 175 Leu Cys Ser Tyr Val Asp Tyr His Ala Arg Gly Thr Thr Pro Leu Ala 180 185 190 Leu Pro Gly Thr Ile Lys Ser Leu Arg Pro Val Gly Val Pro Leu Arg 195 200 205 Thr Ser Ile Leu Pro Pro Ile Ser Ile Met Ser Phe Phe Asn Asn Asn 210 215 220 Gln Ile Ile Lys Ile Ala Pro Arg Pro Ile Ile Gln Ser Gln Thr Val 225 230 235 240 Pro Ile Trp Gln Ser Tyr Leu Ser Phe Pro Thr Ser Asn Arg Lys Gln 245 250 255 Gly Ala Thr Asn Gln Asn Gly Ala Ile Leu Gly Gly Leu Phe Pro Val 260 265 270 Gly Ser Ser Asp Trp Ser Tyr Phe Ser Glu Ile Pro Pro Asn Ser Ser 275 280 285 Gln Leu Lys Pro Leu Ser Ser Ser Phe Leu Gly Arg Leu Tyr Gly Phe 290 295 300 Ala Ser Lys Phe Cys His Val Trp Gly Thr Gly Lys Glu Trp Ile Phe 305 310 315 320 Tyr Ile Val Ser Asp Lys Lys Asn Asp Cys Arg Leu Pro Lys Lys Glu 325 330 335 Asn Leu Pro Asp Lys Leu Ile Phe Glu Arg Phe Gln Val Tyr Ile Thr 340 345 350 Leu Arg Val Val Tyr Asn Gln Ala Thr Thr Ala Asn Gln Leu Ala Tyr 355 360 365 Gly Leu Gly Thr His Glu Val Asn Thr His Thr Asn Leu His Leu Trp 370 375 380 Leu Gln Asn Arg Lys Asn Asn Pro Gln Phe Trp Asp Ile Thr Gln Asp 385 390 395 400 Leu Glu Pro Lys Pro Thr Phe Tyr Arg Ser His Tyr Thr Phe Pro Gln 405 410 415 Arg Ile Thr His Arg Ser Ser Tyr Asn Ile His Pro Asp Tyr Ala Leu 420 425 430 Asn Thr Ser Pro Thr Val Phe Asn Ala Asp Leu Ile Val Val Thr Ser 435 440 445 Gly Val Gly Arg Gln Asn Ser Thr Ile Pro Asp Arg Pro Tyr Phe Glu 450 455 460 Tyr Lys Ala Lys Arg Ile Arg Tyr Tyr Gln Phe Pro Leu Pro Leu Pro 465 470 475 480 Asn Thr Gly Gly Ser Pro Pro Leu Phe Gln Gly Ile Asn Phe Arg Leu 485 490 495 Glu Asn Val Asn Trp Ser Pro Gln Ser His Gly Gly Arg Ile Thr Leu 500 505 510 Val Phe Glu Arg Ser Leu Arg Ser Asn Phe Ile Gly Thr Lys Arg Arg 515 520 525 Trp Arg Tyr Arg Asn Arg Phe Ala Pro His Val Leu Tyr Pro Arg Arg 530 535 540 Arg Leu Ile Asn Gly Leu His Ser Arg Pro Arg Thr Arg Arg Arg Arg 545 550 555 560 Tyr Arg Arg Arg Pro Trp Thr Met Arg Tyr Phe His Phe Phe His Ala 565 570 575 Ala Thr Thr Asn 580 8 557 PRT Type A PWD circovirus 8 Leu Ala Ser Arg Cys Arg Cys Cys Arg Pro Leu Thr Leu Ser Phe Ala 1 5 10 15 Leu Cys Ser Phe Arg Gly Ala Val Gly Tyr Ser Thr Pro Thr Gly Tyr 20 25 30 Asp Lys Arg Pro Pro Ser Phe Cys Phe Val Pro Ala Glu Leu Arg Gly 35 40 45 Lys Gln Asn Asn Gln Lys His Arg Pro Leu Asn Pro Leu Pro Tyr Phe 50 55 60 Glu Glu Gly Gly Pro Thr Gln Ser Asn Gln Ser Ala Ser Lys Cys Pro 65 70 75 80 Ser Thr Thr Asn Gly His Gly Ser Gly Cys Arg Ser Leu Ser Leu Phe 85 90 95 Arg Gly Ala Ser Tyr Leu Ile Ser Cys Tyr Leu Leu Gly Cys Val Arg 100 105 110 Thr His Leu Glu Ala Ser Gly Pro Ser Ala Cys Arg Gly Thr Gln Gln 115 120 125 Ser Tyr Gly Lys Pro Ser Pro Thr Lys Pro Ser Gln Leu Arg Ala Thr 130 135 140 Glu Gln Leu Thr His Ser Phe Asn Gly Arg Ala Pro Gln Val Lys Ser 145 150 155 160 Leu Ser Arg Ser Ser Ala Ala Ala His Asn Ser Ser Leu Gln Val Arg 165 170 175 Leu Pro Gly Ala Arg Asn His Ser Ser Gly Thr Pro Gly Tyr Asn Gln 180 185 190 Gln Ala Pro Cys Arg Ser Ser Ala Tyr Phe Tyr Thr Thr Pro His Ile 195 200 205 Asp His Leu Leu Leu Gln Gln Lys Pro His Asn Lys His Ser Thr Val 210 215 220 Lys Pro His Asp Val Ser Val Thr His Gly Thr Asp Met Ser Gln Leu 225 230 235 240 Ser Leu Pro Tyr Gln Glu Lys Lys Pro Gly Cys Tyr Lys Ser Trp Cys 245 250 255 Asp Pro Gly Gly Pro Ile Thr Ser Arg Leu Gln Gln Gly Leu Gln Leu 260 265 270 Leu Glu Arg Asp Ser Ser Lys Ala Ile Lys Ser Ser Gln Gln Leu Val 275 280 285 Ile Trp Pro Pro Val Arg Leu Gly Ile Gln Leu Leu Pro Gly Val Arg 290 295 300 His Gly Lys Gly Met Tyr Phe Leu Asn Ser Leu Arg Lys Gln Met Thr 305 310 315 320 Ile Thr Lys Ile Lys Ile Lys Ser Pro Arg Glu Pro Tyr Ile Arg Gln 325 330 335 Ile Thr Cys Leu Tyr Asp Val Lys Gly Cys Leu Lys Pro Ser His Asn 340 345 350 Cys Lys Pro Ala Cys Leu Gly Pro Arg His Ala Arg Cys Gln His Pro 355 360 365 Tyr Lys Phe Pro Ala Val Val Pro Lys Lys Lys Ala Pro Val Leu Asn 370 375 380 Asn Pro Arg Ala Arg Thr Gln Pro His Leu Val Gln Leu Pro Leu Tyr 385 390 395 400 Leu Ala Ala Lys His His Pro Pro Leu Leu Leu Tyr Leu Pro Leu Gly 405 410 415 Leu Gln His Leu Pro Asn Cys Leu Gln Cys Gly Leu Tyr Cys Cys His 420 425 430 Val Trp Cys Arg Lys Ser Leu His His Pro Arg Gln Pro Leu Ile Ile 435 440 445 Gly Lys Tyr Pro Leu Ile Pro Phe Thr Pro Thr Pro Pro Gln His Arg 450 455 460 Arg Leu Pro Pro Pro Val Pro Arg His Gln Ile Glu Ala Arg Cys Glu 465 470 475 480 Leu Ile Ala Ala Leu Thr Arg Arg Lys His His Thr Cys Ile Arg Phe 485 490 495 Pro Pro Phe Gln Leu Tyr Gly Asp Lys Pro Ala Met Gln Leu Pro Lys 500 505 510 Gln Leu Arg Pro Thr Gly Phe Ile Thr Lys Glu Pro Pro His Lys Trp 515 520 525 Ser Pro Gln Pro Pro Pro Asp Thr Lys Gln Pro Leu Ala Glu Lys Ala 530 535 540 Val Asp Asp Leu Leu Ser Leu Leu Ala Ser Ser Tyr Tyr 545 550 555 9 939 DNA Type A PWD circovirus CDS (1)..(936) 9 atg cca agc aag aaa agc ggc ccg caa ccc cat aag agg tgg gtg ttc 48 Met Pro Ser Lys Lys Ser Gly Pro Gln Pro His Lys Arg Trp Val Phe 1 5 10 15 acc ctt aat aat cct tcc gag gag gag aaa aac aaa ata cgg gag ctt 96 Thr Leu Asn Asn Pro Ser Glu Glu Glu Lys Asn Lys Ile Arg Glu Leu 20 25 30 cca atc tcc ctt ttt gat tat ttt gtt tgt ggc gag gaa ggt ttg gaa 144 Pro Ile Ser Leu Phe Asp Tyr Phe Val Cys Gly Glu Glu Gly Leu Glu 35 40 45 gag ggt aga act cct cac ctc cag ggg ttt gcg aat ttt gct aag aag 192 Glu Gly Arg Thr Pro His Leu Gln Gly Phe Ala Asn Phe Ala Lys Lys 50 55 60 cag act ttt aac aag gtg aag tgg tat ttt ggt gcc cgc tgc cac atc 240 Gln Thr Phe Asn Lys Val Lys Trp Tyr Phe Gly Ala Arg Cys His Ile 65 70 75 80 gag aaa gcg aaa gga acc gac cag cag aat aaa gaa tac tgc agt aaa 288 Glu Lys Ala Lys Gly Thr Asp Gln Gln Asn Lys Glu Tyr Cys Ser Lys 85 90 95 gaa ggc cac ata ctt atc gag tgt gga gct ccg cgg aac cag ggg aag 336 Glu Gly His Ile Leu Ile Glu Cys Gly Ala Pro Arg Asn Gln Gly Lys 100 105 110 cgc agc gac ctg tct act gct gtg agt acc ctt ttg gag acg ggg tct 384 Arg Ser Asp Leu Ser Thr Ala Val Ser Thr Leu Leu Glu Thr Gly Ser 115 120 125 ttg gtg act gta gcc gag cag ttt cct gta acg tat gtg aga aat ttc 432 Leu Val Thr Val Ala Glu Gln Phe Pro Val Thr Tyr Val Arg Asn Phe 130 135 140 cgc ggg ctg gct gaa ctt ttg aaa gtg agc ggg aag atg cag cag cgt 480 Arg Gly Leu Ala Glu Leu Leu Lys Val Ser Gly Lys Met Gln Gln Arg 145 150 155 160 gat tgg aag aca gct gta cac gtc ata gtg ggc ccg ccc ggt tgt ggg 528 Asp Trp Lys Thr Ala Val His Val Ile Val Gly Pro Pro Gly Cys Gly 165 170 175 aag agc cag tgg gcc cgt aat ttt gct gag cct agg gac acc tac tgg 576 Lys Ser Gln Trp Ala Arg Asn Phe Ala Glu Pro Arg Asp Thr Tyr Trp 180 185 190 aag cct agt aga aat aag tgg tgg gat gga tat cat gga gaa gaa gtt 624 Lys Pro Ser Arg Asn Lys Trp Trp Asp Gly Tyr His Gly Glu Glu Val 195 200 205 gtt gtt ttg gat gat ttt tat ggc tgg tta cct tgg gat gat cta ctg 672 Val Val Leu Asp Asp Phe Tyr Gly Trp Leu Pro Trp Asp Asp Leu Leu 210 215 220 aga ctg tgt gac cgg tat cca ttg act gta gag act aaa ggg ggt act 720 Arg Leu Cys Asp Arg Tyr Pro Leu Thr Val Glu Thr Lys Gly Gly Thr 225 230 235 240 gtt cct ttt ttg gcc cgc agt att ttg att acc agc aat cag gcc ccc 768 Val Pro Phe Leu Ala Arg Ser Ile Leu Ile Thr Ser Asn Gln Ala Pro 245 250 255 cag gaa tgg tac tcc tca act gct gtc cca gct gta gaa gct ctc tat 816 Gln Glu Trp Tyr Ser Ser Thr Ala Val Pro Ala Val Glu Ala Leu Tyr 260 265 270 cgg agg att act act ttg caa ttt tgg aag act gct gga gaa caa tcc 864 Arg Arg Ile Thr Thr Leu Gln Phe Trp Lys Thr Ala Gly Glu Gln Ser 275 280 285 acg gag gta ccc gaa ggc cga ttt gaa gca gtg gac cca ccc tgt gcc 912 Thr Glu Val Pro Glu Gly Arg Phe Glu Ala Val Asp Pro Pro Cys Ala 290 295 300 ctt ttc cca tat aaa ata aat tac tga 939 Leu Phe Pro Tyr Lys Ile Asn Tyr 305 310 10 312 PRT Type A PWD circovirus 10 Met Pro Ser Lys Lys Ser Gly Pro Gln Pro His Lys Arg Trp Val Phe 1 5 10 15 Thr Leu Asn Asn Pro Ser Glu Glu Glu Lys Asn Lys Ile Arg Glu Leu 20 25 30 Pro Ile Ser Leu Phe Asp Tyr Phe Val Cys Gly Glu Glu Gly Leu Glu 35 40 45 Glu Gly Arg Thr Pro His Leu Gln Gly Phe Ala Asn Phe Ala Lys Lys 50 55 60 Gln Thr Phe Asn Lys Val Lys Trp Tyr Phe Gly Ala Arg Cys His Ile 65 70 75 80 Glu Lys Ala Lys Gly Thr Asp Gln Gln Asn Lys Glu Tyr Cys Ser Lys 85 90 95 Glu Gly His Ile Leu Ile Glu Cys Gly Ala Pro Arg Asn Gln Gly Lys 100 105 110 Arg Ser Asp Leu Ser Thr Ala Val Ser Thr Leu Leu Glu Thr Gly Ser 115 120 125 Leu Val Thr Val Ala Glu Gln Phe Pro Val Thr Tyr Val Arg Asn Phe 130 135 140 Arg Gly Leu Ala Glu Leu Leu Lys Val Ser Gly Lys Met Gln Gln Arg 145 150 155 160 Asp Trp Lys Thr Ala Val His Val Ile Val Gly Pro Pro Gly Cys Gly 165 170 175 Lys Ser Gln Trp Ala Arg Asn Phe Ala Glu Pro Arg Asp Thr Tyr Trp 180 185 190 Lys Pro Ser Arg Asn Lys Trp Trp Asp Gly Tyr His Gly Glu Glu Val 195 200 205 Val Val Leu Asp Asp Phe Tyr Gly Trp Leu Pro Trp Asp Asp Leu Leu 210 215 220 Arg Leu Cys Asp Arg Tyr Pro Leu Thr Val Glu Thr Lys Gly Gly Thr 225 230 235 240 Val Pro Phe Leu Ala Arg Ser Ile Leu Ile Thr Ser Asn Gln Ala Pro 245 250 255 Gln Glu Trp Tyr Ser Ser Thr Ala Val Pro Ala Val Glu Ala Leu Tyr 260 265 270 Arg Arg Ile Thr Thr Leu Gln Phe Trp Lys Thr Ala Gly Glu Gln Ser 275 280 285 Thr Glu Val Pro Glu Gly Arg Phe Glu Ala Val Asp Pro Pro Cys Ala 290 295 300 Leu Phe Pro Tyr Lys Ile Asn Tyr 305 310 11 702 DNA Type A PWD circovirus CDS (1)..(699) 11 atg acg tgg cca agg agg cgt tac cgc aga aga cgg acc cgc ccc cgc 48 Met Thr Trp Pro Arg Arg Arg Tyr Arg Arg Arg Arg Thr Arg Pro Arg 1 5 10 15 agc cat ctt gga aac atc ctc cgg aga aga cca tat ttg gta cac ccc 96 Ser His Leu Gly Asn Ile Leu Arg Arg Arg Pro Tyr Leu Val His Pro 20 25 30 gcc ttc aga aac cgt tac aga tgg cgc cga aag acg ggt atc ttc aat 144 Ala Phe Arg Asn Arg Tyr Arg Trp Arg Arg Lys Thr Gly Ile Phe Asn 35 40 45 tcc cgc ctt tct aga gaa ttt gta ctc acc ata aga gga gga cac tcg 192 Ser Arg Leu Ser Arg Glu Phe Val Leu Thr Ile Arg Gly Gly His Ser 50 55 60 cag cca tct tgg aat gtt aac gag ctg aga ttc aac atc ggc cag ttc 240 Gln Pro Ser Trp Asn Val Asn Glu Leu Arg Phe Asn Ile Gly Gln Phe 65 70 75 80 ctc ccc ccc tca ggc ggc acc aac ccc cta ccc cta cct ttc caa tac 288 Leu Pro Pro Ser Gly Gly Thr Asn Pro Leu Pro Leu Pro Phe Gln Tyr 85 90 95 tac cgt att aga aag gct aaa tat gaa ttt tac ccc aga gac ccc atc 336 Tyr Arg Ile Arg Lys Ala Lys Tyr Glu Phe Tyr Pro Arg Asp Pro Ile 100 105 110 acc tct aat caa aga ggt gtt ggg tcc act gtt gtt atc ttg gat gcc 384 Thr Ser Asn Gln Arg Gly Val Gly Ser Thr Val Val Ile Leu Asp Ala 115 120 125 aac ttt gta acc ccc tcc acc aac ttg gcc tat gac ccc tat att aac 432 Asn Phe Val Thr Pro Ser Thr Asn Leu Ala Tyr Asp Pro Tyr Ile Asn 130 135 140 tac tcc tcc cgc cac acc ata agg cag ccc ttt acc tac cac tcc agg 480 Tyr Ser Ser Arg His Thr Ile Arg Gln Pro Phe Thr Tyr His Ser Arg 145 150 155 160 tac ttc acc ccc aaa cca gag cta gac caa aca att gat tgg ttc cag 528 Tyr Phe Thr Pro Lys Pro Glu Leu Asp Gln Thr Ile Asp Trp Phe Gln 165 170 175 cca aat aat aaa aga aac cag ctg tgg ctc cat tta aat acc cac acc 576 Pro Asn Asn Lys Arg Asn Gln Leu Trp Leu His Leu Asn Thr His Thr 180 185 190 aat gtc gag cac aca ggc ctg ggc tat gcg ctc caa aat gca acc aca 624 Asn Val Glu His Thr Gly Leu Gly Tyr Ala Leu Gln Asn Ala Thr Thr 195 200 205 gcc caa aat tat gtg gta agg ttg act att tat gta caa ttc aga gaa 672 Ala Gln Asn Tyr Val Val Arg Leu Thr Ile Tyr Val Gln Phe Arg Glu 210 215 220 ttt atc ctg aaa gac cct cta aat gaa taa 702 Phe Ile Leu Lys Asp Pro Leu Asn Glu 225 230 12 233 PRT Type A PWD circovirus 12 Met Thr Trp Pro Arg Arg Arg Tyr Arg Arg Arg Arg Thr Arg Pro Arg 1 5 10 15 Ser His Leu Gly Asn Ile Leu Arg Arg Arg Pro Tyr Leu Val His Pro 20 25 30 Ala Phe Arg Asn Arg Tyr Arg Trp Arg Arg Lys Thr Gly Ile Phe Asn 35 40 45 Ser Arg Leu Ser Arg Glu Phe Val Leu Thr Ile Arg Gly Gly His Ser 50 55 60 Gln Pro Ser Trp Asn Val Asn Glu Leu Arg Phe Asn Ile Gly Gln Phe 65 70 75 80 Leu Pro Pro Ser Gly Gly Thr Asn Pro Leu Pro Leu Pro Phe Gln Tyr 85 90 95 Tyr Arg Ile Arg Lys Ala Lys Tyr Glu Phe Tyr Pro Arg Asp Pro Ile 100 105 110 Thr Ser Asn Gln Arg Gly Val Gly Ser Thr Val Val Ile Leu Asp Ala 115 120 125 Asn Phe Val Thr Pro Ser Thr Asn Leu Ala Tyr Asp Pro Tyr Ile Asn 130 135 140 Tyr Ser Ser Arg His Thr Ile Arg Gln Pro Phe Thr Tyr His Ser Arg 145 150 155 160 Tyr Phe Thr Pro Lys Pro Glu Leu Asp Gln Thr Ile Asp Trp Phe Gln 165 170 175 Pro Asn Asn Lys Arg Asn Gln Leu Trp Leu His Leu Asn Thr His Thr 180 185 190 Asn Val Glu His Thr Gly Leu Gly Tyr Ala Leu Gln Asn Ala Thr Thr 195 200 205 Ala Gln Asn Tyr Val Val Arg Leu Thr Ile Tyr Val Gln Phe Arg Glu 210 215 220 Phe Ile Leu Lys Asp Pro Leu Asn Glu 225 230 13 621 DNA Type A PWD circovirus CDS (1)..(618) 13 atg ata tcc atc cca cca ctt att tct act agg ctt cca gta ggt gtc 48 Met Ile Ser Ile Pro Pro Leu Ile Ser Thr Arg Leu Pro Val Gly Val 1 5 10 15 cct agg ctc agc aaa att acg ggc cca ctg gct ctt ccc aca acc ggg 96 Pro Arg Leu Ser Lys Ile Thr Gly Pro Leu Ala Leu Pro Thr Thr Gly 20 25 30 cgg gcc cac tat gac gtg tac agc tgt ctt cca atc acg ctg ctg cat 144 Arg Ala His Tyr Asp Val Tyr Ser Cys Leu Pro Ile Thr Leu Leu His 35 40 45 ctt ccc gct cac ttt caa aag ttc agc cag ccc gcg gaa att tct cac 192 Leu Pro Ala His Phe Gln Lys Phe Ser Gln Pro Ala Glu Ile Ser His 50 55 60 ata cgt tac agg aaa ctg ctc ggc tac agt cac caa aga ccc cgt ctc 240 Ile Arg Tyr Arg Lys Leu Leu Gly Tyr Ser His Gln Arg Pro Arg Leu 65 70 75 80 caa aag ggt act cac agc agt aga cag gtc gct gcg ctt ccc ctg gtt 288 Gln Lys Gly Thr His Ser Ser Arg Gln Val Ala Ala Leu Pro Leu Val 85 90 95 ccg cgg agc tcc aca ctc gat aag tat gtg gcc ttc ttt act gca gta 336 Pro Arg Ser Ser Thr Leu Asp Lys Tyr Val Ala Phe Phe Thr Ala Val 100 105 110 ttc ttt att ctg ctg gtc ggt tcc ttt cgc ttt ctc gat gtg gca gcg 384 Phe Phe Ile Leu Leu Val Gly Ser Phe Arg Phe Leu Asp Val Ala Ala 115 120 125 ggc acc aaa ata cca ctt cac ctt gtt aaa agt ctg ctt ctt agc aaa 432 Gly Thr Lys Ile Pro Leu His Leu Val Lys Ser Leu Leu Leu Ser Lys 130 135 140 att cgc aaa ccc ctg gag gtg agg agt tct acc ctc ttc caa acc ttc 480 Ile Arg Lys Pro Leu Glu Val Arg Ser Ser Thr Leu Phe Gln Thr Phe 145 150 155 160 ctc gcc aca aac aaa ata atc aaa aag gga gat tgg aag ctc ccg tat 528 Leu Ala Thr Asn Lys Ile Ile Lys Lys Gly Asp Trp Lys Leu Pro Tyr 165 170 175 ttt gtt ttt ctc ctc ctc gga agg att att aag ggt gaa cac cca cct 576 Phe Val Phe Leu Leu Leu Gly Arg Ile Ile Lys Gly Glu His Pro Pro 180 185 190 ctt atg ggg ttg cgg gcc gct ttt ctt gct tgg cat ttt cac tga 621 Leu Met Gly Leu Arg Ala Ala Phe Leu Ala Trp His Phe His 195 200 205 14 206 PRT Type A PWD circovirus 14 Met Ile Ser Ile Pro Pro Leu Ile Ser Thr Arg Leu Pro Val Gly Val 1 5 10 15 Pro Arg Leu Ser Lys Ile Thr Gly Pro Leu Ala Leu Pro Thr Thr Gly 20 25 30 Arg Ala His Tyr Asp Val Tyr Ser Cys Leu Pro Ile Thr Leu Leu His 35 40 45 Leu Pro Ala His Phe Gln Lys Phe Ser Gln Pro Ala Glu Ile Ser His 50 55 60 Ile Arg Tyr Arg Lys Leu Leu Gly Tyr Ser His Gln Arg Pro Arg Leu 65 70 75 80 Gln Lys Gly Thr His Ser Ser Arg Gln Val Ala Ala Leu Pro Leu Val 85 90 95 Pro Arg Ser Ser Thr Leu Asp Lys Tyr Val Ala Phe Phe Thr Ala Val 100 105 110 Phe Phe Ile Leu Leu Val Gly Ser Phe Arg Phe Leu Asp Val Ala Ala 115 120 125 Gly Thr Lys Ile Pro Leu His Leu Val Lys Ser Leu Leu Leu Ser Lys 130 135 140 Ile Arg Lys Pro Leu Glu Val Arg Ser Ser Thr Leu Phe Gln Thr Phe 145 150 155 160 Leu Ala Thr Asn Lys Ile Ile Lys Lys Gly Asp Trp Lys Leu Pro Tyr 165 170 175 Phe Val Phe Leu Leu Leu Gly Arg Ile Ile Lys Gly Glu His Pro Pro 180 185 190 Leu Met Gly Leu Arg Ala Ala Phe Leu Ala Trp His Phe His 195 200 205 15 1767 DNA Type B PWD circovirus CDS (1)..(111) CDS (115)..(243) CDS (247)..(267) CDS (271)..(360) CDS (364)..(417) CDS (421)..(447) CDS (451)..(471) CDS (475)..(510) CDS (514)..(516) CDS (520)..(729) CDS (733)..(753) CDS (757)..(759) CDS (763)..(804) CDS (808)..(861) CDS (865)..(984) CDS (988)..(1173) CDS (1177)..(1233) CDS (1237)..(1359) CDS (1363)..(1476) CDS (1480)..(1737) CDS (1741)..(1767) 15 acc agc gca ctt cgg cag cgg cag cac ctc ggc agc acc tca gca gca 48 Thr Ser Ala Leu Arg Gln Arg Gln His Leu Gly Ser Thr Ser Ala Ala 1 5 10 15 aca tgc cca gca aga aga atg gaa gaa gcg gac ccc aac ccc ata aaa 96 Thr Cys Pro Ala Arg Arg Met Glu Glu Ala Asp Pro Asn Pro Ile Lys 20 25 30 ggt ggg tgt tca ctc tga ata atc ctt ccg aag acg agc gca aga aaa 144 Gly Gly Cys Ser Leu Ile Ile Leu Pro Lys Thr Ser Ala Arg Lys 35 40 45 tac ggg atc ttc caa tat ccc tat ttg att att tta ttg ttg gcg agg 192 Tyr Gly Ile Phe Gln Tyr Pro Tyr Leu Ile Ile Leu Leu Leu Ala Arg 50 55 60 agg gta atg agg aag gac gaa cac ctc acc tcc agg ggt tcg cta att 240 Arg Val Met Arg Lys Asp Glu His Leu Thr Ser Arg Gly Ser Leu Ile 65 70 75 ttg tga aga agc aga ctt tta ata aag tga agt ggt att tgg gtg ccc 288 Leu Arg Ser Arg Leu Leu Ile Lys Ser Gly Ile Trp Val Pro 80 85 90 gct gcc aca tcg aga aag cga aag gaa cag atc agc aga ata aag aat 336 Ala Ala Thr Ser Arg Lys Arg Lys Glu Gln Ile Ser Arg Ile Lys Asn 95 100 105 act gca gta aag aag gca act tac tga tgg agt gtg gag ctc cta gat 384 Thr Ala Val Lys Lys Ala Thr Tyr Trp Ser Val Glu Leu Leu Asp 110 115 120 ctc agg gac aac gga gtg acc tgt cta ctg ctg tga gta cct tgt tgg 432 Leu Arg Asp Asn Gly Val Thr Cys Leu Leu Leu Val Pro Cys Trp 125 130 135 aga gcg gga gtc tgg tga ccg ttg cag agc agc acc ctg taa cgt ttg 480 Arg Ala Gly Val Trp Pro Leu Gln Ser Ser Thr Leu Arg Leu 140 145 150 tca gaa att tcc gcg ggc tgg ctg aac ttt tga aag tga gcg gga aaa 528 Ser Glu Ile Ser Ala Gly Trp Leu Asn Phe Lys Ala Gly Lys 155 160 165 tgc aga agc gtg att gga aga cta atg tac acg tca ttg tgg ggc cac 576 Cys Arg Ser Val Ile Gly Arg Leu Met Tyr Thr Ser Leu Trp Gly His 170 175 180 ctg ggt gtg gta aaa gca aat ggg ctg cta att ttg cag acc cgg aaa 624 Leu Gly Val Val Lys Ala Asn Gly Leu Leu Ile Leu Gln Thr Arg Lys 185 190 195 cca cat act gga aac cac cta gaa aca agt ggt ggg atg gtt acc atg 672 Pro His Thr Gly Asn His Leu Glu Thr Ser Gly Gly Met Val Thr Met 200 205 210 215 gtg aag aag tgg ttg tta ttg atg act ttt atg gct ggc tgc cct ggg 720 Val Lys Lys Trp Leu Leu Leu Met Thr Phe Met Ala Gly Cys Pro Gly 220 225 230 atg atc tac tga gac tgt gtg atc gat atc cat tga ctg tag aga cta 768 Met Ile Tyr Asp Cys Val Ile Asp Ile His Leu Arg Leu 235 240 aag gtg gaa ctg tac ctt ttt tgg ccc gca gta ttc tga tta cca gca 816 Lys Val Glu Leu Tyr Leu Phe Trp Pro Ala Val Phe Leu Pro Ala 245 250 255 atc aga ccc cgt tgg aat ggt act cct caa ctg ctg tcc cag ctg tag 864 Ile Arg Pro Arg Trp Asn Gly Thr Pro Gln Leu Leu Ser Gln Leu 260 265 270 aag ctc ttt atc gga gga tta ctt cct tgg tat ttt gga aga atg cta 912 Lys Leu Phe Ile Gly Gly Leu Leu Pro Trp Tyr Phe Gly Arg Met Leu 275 280 285 290 cag aac aat cca cgg agg aag ggg gcc agt tcg tca ccc ttt ccc ccc 960 Gln Asn Asn Pro Arg Arg Lys Gly Ala Ser Ser Ser Pro Phe Pro Pro 295 300 305 cat gcc ctg aat ttc cat atg aaa taa att act gag tct ttt tta tca 1008 His Ala Leu Asn Phe His Met Lys Ile Thr Glu Ser Phe Leu Ser 310 315 320 ctt cgt aat ggt ttt tat tat tca tta agg gtt aag tgg ggg gtc ttt 1056 Leu Arg Asn Gly Phe Tyr Tyr Ser Leu Arg Val Lys Trp Gly Val Phe 325 330 335 aaa att aaa ttc tct gaa ttg tac ata cat ggt tac acg gat att gta 1104 Lys Ile Lys Phe Ser Glu Leu Tyr Ile His Gly Tyr Thr Asp Ile Val 340 345 350 ttc ctg gtc gta tat act gtt ttc gaa cgc agt gcc gag gcc tac gtg 1152 Phe Leu Val Val Tyr Thr Val Phe Glu Arg Ser Ala Glu Ala Tyr Val 355 360 365 gtc tac att tcc agc agt ttg tag tct cag cca cag ctg gtt tct ttt 1200 Val Tyr Ile Ser Ser Ser Leu Ser Gln Pro Gln Leu Val Ser Phe 370 375 380 gtt gtt tgg ttg gaa gta atc aat agt gaa atc tag gac agg ttt ggg 1248 Val Val Trp Leu Glu Val Ile Asn Ser Glu Ile Asp Arg Phe Gly 385 390 395 ggt aaa gta ccg gga gtg gta gga gaa ggg ctg ggt tat ggt atg gcg 1296 Gly Lys Val Pro Gly Val Val Gly Glu Gly Leu Gly Tyr Gly Met Ala 400 405 410 415 gga gga gta gtt tac ata ggg gtc ata ggt gag ggc tgt ggc ctt tgt 1344 Gly Gly Val Val Tyr Ile Gly Val Ile Gly Glu Gly Cys Gly Leu Cys 420 425 430 tac aaa gtt atc atc taa aat aac agc act gga gcc cac tcc cct gtc 1392 Tyr Lys Val Ile Ile Asn Asn Ser Thr Gly Ala His Ser Pro Val 435 440 445 acc ctg ggt gat cgg gga gca ggg cca gaa ttc aac ctt aac ctt tct 1440 Thr Leu Gly Asp Arg Gly Ala Gly Pro Glu Phe Asn Leu Asn Leu Ser 450 455 460 tat tct gta gta ttc aaa ggg cac aga gcg ggg gtt tga ccc ccc tcc 1488 Tyr Ser Val Val Phe Lys Gly His Arg Ala Gly Val Pro Pro Ser 465 470 475 tgg ggg aag aaa gtc att aat att gaa tct cat cat gtc cac cgc cca 1536 Trp Gly Lys Lys Val Ile Asn Ile Glu Ser His His Val His Arg Pro 480 485 490 gga ggg cgt tct gac tgt ggt tcg ctt gac agt ata tcc gaa ggt gcg 1584 Gly Gly Arg Ser Asp Cys Gly Ser Leu Asp Ser Ile Ser Glu Gly Ala 495 500 505 gga gag gcg ggt gtt gaa gat gcc att ttt cct tct cca gcg gta acg 1632 Gly Glu Ala Gly Val Glu Asp Ala Ile Phe Pro Ser Pro Ala Val Thr 510 515 520 525 gtg gcg ggg gtg gac gag cca ggg gcg gcg gcg gag gat ctg gcc aag 1680 Val Ala Gly Val Asp Glu Pro Gly Ala Ala Ala Glu Asp Leu Ala Lys 530 535 540 atg gct gcg ggg gcg gtg tct tct tct tcg gta acg cct cct tgg ata 1728 Met Ala Ala Gly Ala Val Ser Ser Ser Ser Val Thr Pro Pro Trp Ile 545 550 555 cgt cat atc tga aaa cga aag aag tgc gct gta agt att 1767 Arg His Ile Lys Arg Lys Lys Cys Ala Val Ser Ile 560 565 16 569 PRT Type B PWD circovirus 16 Thr Ser Ala Leu Arg Gln Arg Gln His Leu Gly Ser Thr Ser Ala Ala 1 5 10 15 Thr Cys Pro Ala Arg Arg Met Glu Glu Ala Asp Pro Asn Pro Ile Lys 20 25 30 Gly Gly Cys Ser Leu Ile Ile Leu Pro Lys Thr Ser Ala Arg Lys Tyr 35 40 45 Gly Ile Phe Gln Tyr Pro Tyr Leu Ile Ile Leu Leu Leu Ala Arg Arg 50 55 60 Val Met Arg Lys Asp Glu His Leu Thr Ser Arg Gly Ser Leu Ile Leu 65 70 75 80 Arg Ser Arg Leu Leu Ile Lys Ser Gly Ile Trp Val Pro Ala Ala Thr 85 90 95 Ser Arg Lys Arg Lys Glu Gln Ile Ser Arg Ile Lys Asn Thr Ala Val 100 105 110 Lys Lys Ala Thr Tyr Trp Ser Val Glu Leu Leu Asp Leu Arg Asp Asn 115 120 125 Gly Val Thr Cys Leu Leu Leu Val Pro Cys Trp Arg Ala Gly Val Trp 130 135 140 Pro Leu Gln Ser Ser Thr Leu Arg Leu Ser Glu Ile Ser Ala Gly Trp 145 150 155 160 Leu Asn Phe Lys Ala Gly Lys Cys Arg Ser Val Ile Gly Arg Leu Met 165 170 175 Tyr Thr Ser Leu Trp Gly His Leu Gly Val Val Lys Ala Asn Gly Leu 180 185 190 Leu Ile Leu Gln Thr Arg Lys Pro His Thr Gly Asn His Leu Glu Thr 195 200 205 Ser Gly Gly Met Val Thr Met Val Lys Lys Trp Leu Leu Leu Met Thr 210 215 220 Phe Met Ala Gly Cys Pro Gly Met Ile Tyr Asp Cys Val Ile Asp Ile 225 230 235 240 His Leu Arg Leu Lys Val Glu Leu Tyr Leu Phe Trp Pro Ala Val Phe 245 250 255 Leu Pro Ala Ile Arg Pro Arg Trp Asn Gly Thr Pro Gln Leu Leu Ser 260 265 270 Gln Leu Lys Leu Phe Ile Gly Gly Leu Leu Pro Trp Tyr Phe Gly Arg 275 280 285 Met Leu Gln Asn Asn Pro Arg Arg Lys Gly Ala Ser Ser Ser Pro Phe 290 295 300 Pro Pro His Ala Leu Asn Phe His Met Lys Ile Thr Glu Ser Phe Leu 305 310 315 320 Ser Leu Arg Asn Gly Phe Tyr Tyr Ser Leu Arg Val Lys Trp Gly Val 325 330 335 Phe Lys Ile Lys Phe Ser Glu Leu Tyr Ile His Gly Tyr Thr Asp Ile 340 345 350 Val Phe Leu Val Val Tyr Thr Val Phe Glu Arg Ser Ala Glu Ala Tyr 355 360 365 Val Val Tyr Ile Ser Ser Ser Leu Ser Gln Pro Gln Leu Val Ser Phe 370 375 380 Val Val Trp Leu Glu Val Ile Asn Ser Glu Ile Asp Arg Phe Gly Gly 385 390 395 400 Lys Val Pro Gly Val Val Gly Glu Gly Leu Gly Tyr Gly Met Ala Gly 405 410 415 Gly Val Val Tyr Ile Gly Val Ile Gly Glu Gly Cys Gly Leu Cys Tyr 420 425 430 Lys Val Ile Ile Asn Asn Ser Thr Gly Ala His Ser Pro Val Thr Leu 435 440 445 Gly Asp Arg Gly Ala Gly Pro Glu Phe Asn Leu Asn Leu Ser Tyr Ser 450 455 460 Val Val Phe Lys Gly His Arg Ala Gly Val Pro Pro Ser Trp Gly Lys 465 470 475 480 Lys Val Ile Asn Ile Glu Ser His His Val His Arg Pro Gly Gly Arg 485 490 495 Ser Asp Cys Gly Ser Leu Asp Ser Ile Ser Glu Gly Ala Gly Glu Ala 500 505 510 Gly Val Glu Asp Ala Ile Phe Pro Ser Pro Ala Val Thr Val Ala Gly 515 520 525 Val Asp Glu Pro Gly Ala Ala Ala Glu Asp Leu Ala Lys Met Ala Ala 530 535 540 Gly Ala Val Ser Ser Ser Ser Val Thr Pro Pro Trp Ile Arg His Ile 545 550 555 560 Lys Arg Lys Lys Cys Ala Val Ser Ile 565 17 542 PRT Type B PWD circovirus 17 Pro Ala His Phe Gly Ser Gly Ser Thr Ser Ala Ala Pro Gln Gln Gln 1 5 10 15 His Ala Gln Gln Glu Glu Trp Lys Lys Arg Thr Pro Thr Pro Lys Val 20 25 30 Gly Val His Ser Glu Ser Phe Arg Arg Arg Ala Gln Glu Asn Thr Gly 35 40 45 Ser Ser Asn Ile Pro Ile Leu Phe Tyr Cys Trp Arg Gly Gly Gly Arg 50 55 60 Thr Asn Thr Ser Pro Pro Gly Val Arg Phe Cys Glu Glu Ala Asp Phe 65 70 75 80 Ser Glu Val Val Phe Gly Cys Pro Leu Pro His Arg Glu Ser Glu Arg 85 90 95 Asn Arg Ser Ala Glu Arg Ile Leu Gln Arg Arg Gln Leu Thr Asp Gly 100 105 110 Val Trp Ser Ser Ile Ser Gly Thr Thr Glu Pro Val Tyr Cys Cys Glu 115 120 125 Tyr Leu Val Gly Glu Arg Glu Ser Gly Asp Arg Cys Arg Ala Ala Pro 130 135 140 Cys Asn Val Cys Gln Lys Phe Pro Arg Ala Gly Thr Phe Glu Ser Glu 145 150 155 160 Arg Glu Asn Ala Glu Ala Cys Thr Arg His Cys Gly Ala Thr Trp Val 165 170 175 Trp Lys Gln Met Gly Cys Phe Cys Arg Pro Gly Asn His Ile Leu Glu 180 185 190 Thr Thr Lys Gln Val Val Gly Trp Leu Pro Trp Arg Ser Gly Cys Tyr 195 200 205 Leu Leu Trp Leu Ala Ala Leu Gly Ser Thr Glu Thr Val Ser Ile Ser 210 215 220 Ile Asp Cys Arg Asp Arg Trp Asn Cys Thr Phe Phe Gly Pro Gln Tyr 225 230 235 240 Ser Asp Tyr Gln Gln Ser Asp Pro Val Gly Met Val Leu Leu Asn Cys 245 250 255 Cys Pro Ser Cys Arg Ser Ser Leu Ser Glu Asp Tyr Phe Leu Gly Ile 260 265 270 Leu Glu Glu Cys Tyr Arg Thr Ile His Gly Gly Arg Gly Pro Val Arg 275 280 285 His Pro Phe Pro Pro Met Pro Asn Lys Leu Leu Ser Leu Phe Tyr His 290 295 300 Phe Val Met Val Phe Ile Ile His Gly Leu Ser Gly Gly Ser Leu Lys 305 310 315 320 Leu Asn Ser Leu Asn Cys Thr Tyr Met Val Thr Arg Ile Leu Tyr Ser 325 330 335 Trp Ser Tyr Ile Leu Phe Ser Asn Ala Val Pro Arg Pro Thr Trp Ser 340 345 350 Thr Phe Pro Ala Val Cys Ser Leu Ser His Ser Trp Phe Leu Leu Leu 355 360 365 Phe Gly Trp Lys Ser Ile Val Lys Ser Arg Thr Gly Leu Gly Val Lys 370 375 380 Tyr Arg Glu Trp Glu Lys Gly Trp Val Met Val Trp Arg Glu Glu Val 385 390 395 400 Arg Ala Val Ala Phe Val Thr Lys Leu Ser Ser Lys Ile Thr Ala Leu 405 410 415 Glu Pro Thr Pro Leu Ser Pro Trp Val Ile Gly Glu Gln Gly Gln Asn 420 425 430 Ser Thr Leu Thr Phe Leu Ile Leu Tyr Ser Lys Gly Thr Glu Arg Gly 435 440 445 Phe Asp Pro Pro Pro Gly Gly Arg Lys Ser Leu Ile Leu Asn Leu Ile 450 455 460 Met Ser Thr Ala Gln Glu Gly Val Leu Thr Val Val Arg Leu Thr Val 465 470 475 480 Tyr Pro Lys Val Arg Glu Arg Arg Val Leu Lys Met Pro Phe Phe Leu 485 490 495 Leu Gln Arg Arg Trp Arg Gly Trp Thr Ser Gln Gly Arg Arg Arg Arg 500 505 510 Ile Trp Pro Arg Trp Leu Arg Gly Arg Cys Leu Leu Leu Arg Arg Leu 515 520 525 Leu Gly Tyr Val Ile Ser Glu Asn Glu Arg Ser Ala Leu Val 530 535 540 18 566 PRT Type B PWD circovirus 18 Gln Arg Thr Ser Ala Ala Ala Ala Pro Arg Gln His Leu Ser Ser Asn 1 5 10 15 Met Pro Ser Lys Lys Asn Gly Arg Ser Gly Pro Gln Pro His Lys Arg 20 25 30 Trp Val Phe Thr Leu Asn Asn Pro Ser Glu Asp Glu Arg Lys Lys Ile 35 40 45 Arg Asp Leu Pro Ile Ser Leu Phe Asp Tyr Phe Ile Val Gly Glu Glu 50 55 60 Gly Asn Glu Glu Gly Arg Thr Pro His Leu Gln Gly Phe Ala Asn Phe 65 70 75 80 Val Lys Lys Gln Thr Phe Asn Lys Val Lys Trp Tyr Leu Gly Ala Arg 85 90 95 Cys His Ile Glu Lys Ala Lys Gly Thr Asp Gln Gln Asn Lys Glu Tyr 100 105 110 Cys Ser Lys Glu Gly Asn Leu Leu Met Glu Cys Gly Ala Pro Arg Ser 115 120 125 Gln Gly Gln Arg Ser Asp Leu Ser Thr Ala Val Ser Thr Leu Leu Glu 130 135 140 Ser Gly Ser Leu Val Thr Val Ala Glu Gln His Pro Val Thr Phe Val 145 150 155 160 Arg Asn Phe Arg Gly Leu Ala Glu Leu Leu Lys Val Ser Gly Lys Met 165 170 175 Gln Lys Arg Asp Trp Lys Thr Asn Val His Val Ile Val Gly Pro Pro 180 185 190 Gly Cys Gly Lys Ser Lys Trp Ala Ala Asn Phe Ala Asp Pro Glu Thr 195 200 205 Thr Tyr Trp Lys Pro Pro Arg Asn Lys Trp Trp Asp Gly Tyr His Gly 210 215 220 Glu Glu Val Val Val Ile Asp Asp Phe Tyr Gly Trp Leu Pro Trp Asp 225 230 235 240 Asp Leu Leu Arg Leu Cys Asp Arg Tyr Pro Leu Thr Val Glu Thr Lys 245 250 255 Gly Gly Thr Val Pro Phe Leu Ala Arg Ser Ile Leu Ile Thr Ser Asn 260 265 270 Gln Thr Pro Leu Glu Trp Tyr Ser Ser Thr Ala Val Pro Ala Val Glu 275 280 285 Ala Leu Tyr Arg Arg Ile Thr Ser Leu Val Phe Trp Lys Asn Ala Thr 290 295 300 Glu Gln Ser Thr Glu Glu Gly Gly Gln Phe Val Thr Leu Ser Pro Pro 305 310 315 320 Cys Pro Glu Phe Pro Tyr Glu Ile Asn Tyr Val Phe Phe Ile Thr Ser 325 330 335 Trp Phe Leu Leu Phe Ile Lys Gly Val Gly Gly Leu Ile Val His Thr 340 345 350 Trp Leu His Gly Tyr Cys Ile Pro Gly Arg Ile Tyr Cys Phe Arg Thr 355 360 365 Gln Cys Arg Gly Leu Arg Gly Leu His Phe Gln Gln Phe Val Val Ser 370 375 380 Ala Thr Ala Gly Phe Phe Cys Cys Leu Val Gly Ser Asn Gln Asn Leu 385 390 395 400 Gly Gln Val Trp Gly Ser Thr Gly Ser Gly Arg Arg Arg Ala Gly Leu 405 410 415 Trp Tyr Gly Gly Arg Ser Ser Leu His Arg Gly His Arg Gly Leu Trp 420 425 430 Pro Leu Leu Gln Ser Tyr His Leu Lys Gln His Trp Ser Pro Leu Pro 435 440 445 Cys His Pro Gly Ser Gly Ser Arg Ala Arg Ile Gln Pro Pro Phe Leu 450 455 460 Phe Cys Ser Ile Gln Arg Ala Gln Ser Gly Gly Leu Thr Pro Leu Leu 465 470 475 480 Gly Glu Glu Ser His Ile Ser Ser Cys Pro Pro Pro Arg Arg Ala Phe 485 490 495 Leu Trp Phe Ala Gln Tyr Ile Arg Arg Cys Gly Arg Gly Gly Cys Arg 500 505 510 Cys His Phe Ser Phe Ser Ser Gly Asn Gly Gly Gly Gly Gly Arg Ala 515 520 525 Arg Gly Gly Gly Gly Gly Ser Gly Gln Asp Gly Cys Gly Gly Gly Val 530 535 540 Phe Phe Phe Gly Asn Ala Ser Leu Asp Thr Ser Tyr Leu Lys Thr Lys 545 550 555 560 Glu Val Arg Cys Lys Tyr 565 19 1767 DNA Type B PWD circovirus 19 aatacttaca gcgcacttct ttcgttttca gatatgacgt atccaaggag gcgttaccga 60 agaagaagac accgcccccg cagccatctt ggccagatcc tccgccgccg cccctggctc 120 gtccaccccc gccaccgtta ccgctggaga aggaaaaatg gcatcttcaa cacccgcctc 180 tcccgcacct tcggatatac tgtcaagcga accacagtca gaacgccctc ctgggcggtg 240 gacatgatga gattcaatat taatgacttt cttcccccag gaggggggtc aaacccccgc 300 tctgtgccct ttgaatacta cagaataaga aaggttaagg ttgaattctg gccctgctcc 360 ccgatcaccc agggtgacag gggagtgggc tccagtgctg ttattttaga tgataacttt 420 gtaacaaagg ccacagccct cacctatgac ccctatgtaa actactcctc ccgccatacc 480 ataacccagc ccttctccta ccactcccgg tactttaccc ccaaacctgt cctagatttc 540 actattgatt acttccaacc aaacaacaaa agaaaccagc tgtggctgag actacaaact 600 gctggaaatg tagaccacgt aggcctcggc actgcgttcg aaaacagtat atacgaccag 660 gaatacaata tccgtgtaac catgtatgta caattcagag aatttaattt taaagacccc 720 ccacttaacc cttaatgaat aataaaaacc attacgaagt gataaaaaag actcagtaat 780 ttatttcata tggaaattca gggcatgggg gggaaagggt gacgaactgg cccccttcct 840 ccgtggattg ttctgtagca ttcttccaaa ataccaagga agtaatcctc cgataaagag 900 cttctacagc tgggacagca gttgaggagt accattccaa cggggtctga ttgctggtaa 960 tcagaatact gcgggccaaa aaaggtacag ttccaccttt agtctctaca gtcaatggat 1020 atcgatcaca cagtctcagt agatcatccc agggcagcca gccataaaag tcatcaataa 1080 caaccacttc ttcaccatgg taaccatccc accacttgtt tctaggtggt ttccagtatg 1140 tggtttccgg gtctgcaaaa ttagcagccc atttgctttt accacaccca ggtggcccca 1200 caatgacgtg tacattagtc ttccaatcac gcttctgcat tttcccgctc actttcaaaa 1260 gttcagccag cccgcggaaa tttctgacaa acgttacagg gtgctgctct gcaacggtca 1320 ccagactccc gctctccaac aaggtactca cagcagtaga caggtcactc cgttgtccct 1380 gagatctagg agctccacac tccatcagta agttgccttc tttactgcag tattctttat 1440 tctgctgatc tgttcctttc gctttctcga tgtggcagcg ggcacccaaa taccacttca 1500 ctttattaaa agtctgcttc ttcacaaaat tagcgaaccc ctggaggtga ggtgttcgtc 1560 cttcctcatt accctcctcg ccaacaataa aataatcaaa tagggatatt ggaagatccc 1620 gtattttctt gcgctcgtct tcggaaggat tattcagagt gaacacccac cttttatggg 1680 gttggggtcc gcttcttcca ttcttcttgc tgggcatgtt gctgctgagg tgctgccgag 1740 gtgctgccgc tgccgaagtg cgctggt 1767 20 567 PRT Type B PWD circovirus 20 Gly Ala Cys Lys Pro Leu Pro Leu Val Glu Ala Ala Gly Cys Cys Cys 1 5 10 15 Ala Trp Cys Ser Ser His Phe Phe Arg Val Gly Val Gly Tyr Phe Thr 20 25 30 Pro Thr Glu Ser Tyr Asp Lys Arg Leu Arg Ala Cys Ser Phe Val Pro 35 40 45 Asp Glu Leu Ile Gly Ile Gln Asn Asn Gln Gln Arg Pro Pro Tyr His 50 55 60 Pro Leu Val Phe Val Glu Gly Gly Pro Thr Arg Asn Gln Ser Ser Ala 65 70 75 80 Ser Lys Tyr Leu Ser Thr Thr Asn Pro His Gly Ser Gly Cys Arg Ser 85 90 95 Leu Ser Leu Phe Leu Asp Ala Ser Tyr Leu Ile Ser Cys Tyr Leu Leu 100 105 110 Cys Ser Val Ser Pro Thr His Leu Glu Ile Glu Pro Val Val Ser His 115 120 125 Gly Thr Gln Gln Ser Tyr Arg Thr Pro Ser Arg Ser Asp Pro Ser Arg 130 135 140 Gln Leu Ala Ala Gly Gln Leu Thr Gln Phe Asn Gly Arg Ala Pro Gln 145 150 155 160 Val Lys Ser Leu Ser Arg Ser Phe Ala Ser Ala His Asn Ser Ser His 165 170 175 Val Arg Gln Pro Ala Val Gln Thr His Tyr Phe Cys Ile Pro Gln Asn 180 185 190 Gln Leu Gly Pro Phe Trp Met Ser Ser Val Val Phe Cys Thr Thr Pro 195 200 205 His Asn Gly His His Leu Leu Pro Gln Gln His Ser Lys His Ser Ala 210 215 220 Ala Arg Pro His Asp Val Ser Val Thr His Asp Ile Asp Met Ser Gln 225 230 235 240 Leu Ser Leu His Phe Gln Val Lys Lys Pro Gly Cys Tyr Glu Ser Trp 245 250 255 Cys Asp Ser Gly Thr Pro Ile Thr Ser Arg Leu Gln Gln Gly Leu Gln 260 265 270 Leu Leu Glu Lys Asp Ser Ser Lys Arg Pro Ile Lys Ser Ser His Leu 275 280 285 Val Ile Trp Pro Pro Leu Pro Gly Thr Arg Gly Lys Gly Gly Met Gly 290 295 300 Gln Ile Glu Met His Phe Leu Asn Ser Leu Arg Lys Lys Thr Ile Thr 305 310 315 320 Lys Ile Ile Pro Asn Leu Pro Pro Asp Lys Phe Asn Phe Glu Arg Phe 325 330 335 Gln Val Tyr Met Thr Val Arg Ile Asn Tyr Glu Gln Asp Tyr Ile Ser 340 345 350 Asn Glu Phe Ala Thr Gly Leu Gly Val His Asp Val Asn Gly Ala Thr 355 360 365 Gln Leu Arg Leu Trp Leu Gln Asn Arg Lys Asn Asn Pro Gln Phe Tyr 370 375 380 Asp Ile Thr Phe Asp Leu Val Pro Lys Pro Thr Phe Tyr Arg Ser His 385 390 395 400 Tyr Ser Phe Pro Gln Thr Ile Thr His Arg Ser Ser Tyr Asn Val Tyr 405 410 415 Pro Asp Tyr Thr Leu Ala Thr Ala Lys Thr Val Pro Asn Asp Asp Leu 420 425 430 Ile Val Ala Ser Ser Gly Val Gly Arg Asp Gly Gln Thr Ile Pro Ser 435 440 445 Cys Pro Trp Phe Glu Val Lys Val Lys Arg Ile Arg Tyr Tyr Glu Phe 450 455 460 Pro Val Ser Arg Pro Asn Ser Gly Gly Gly Pro Pro Leu Phe Asp Asn 465 470 475 480 Ile Asn Phe Arg Met Met Asp Val Ala Trp Ser Pro Thr Arg Val Thr 485 490 495 Thr Arg Lys Val Thr Tyr Gly Phe Thr Arg Ser Leu Arg Thr Asn Phe 500 505 510 Ile Gly Asn Lys Arg Arg Trp Arg Tyr Arg His Arg Pro His Val Leu 515 520 525 Trp Pro Arg Arg Arg Leu Ile Gln Gly Leu His Ser Arg Pro Arg His 530 535 540 Arg Arg Arg Arg Tyr Arg Arg Arg Pro Tyr Thr Met Asp Ser Phe Ser 545 550 555 560 Leu Leu Ala Ser Tyr Thr Asn 565 21 566 PRT Type B PWD circovirus 21 Trp Arg Val Glu Ala Ala Ala Ala Gly Arg Cys Cys Arg Leu Leu Leu 1 5 10 15 Met Gly Leu Leu Phe Phe Pro Leu Leu Pro Gly Trp Gly Trp Leu Leu 20 25 30 His Thr Asn Val Arg Phe Leu Gly Glu Ser Ser Ser Arg Leu Phe Ile 35 40 45 Arg Ser Arg Gly Ile Asp Arg Asn Ser Lys Ile Thr Pro Ser Ser Pro 50 55 60 Leu Ser Ser Pro Arg Val Gly Arg Trp Pro Asn Ala Leu Lys Thr Phe 65 70 75 80 Phe Cys Val Lys Leu Leu Thr Phe His Tyr Lys Pro Ala Arg Gln Trp 85 90 95 Met Ser Phe Ala Phe Pro Val Ser Cys Phe Leu Ser Tyr Gln Leu Leu 100 105 110 Ser Pro Leu Lys Ser Ile Ser His Pro Ala Gly Leu Asp Pro Cys Arg 115 120 125 Leu Ser Arg Asp Val Ala Thr Leu Val Lys Asn Ser Leu Pro Leu Arg 130 135 140 Thr Val Thr Ala Ser Cys Cys Gly Thr Val Asn Thr Leu Phe Lys Arg 145 150 155 160 Pro Ser Ala Ser Ser Lys Phe Thr Leu Pro Phe Ile Cys Phe Arg Ser 165 170 175 Gln Phe Val Leu Thr Cys Thr Met Thr Pro Gly Gly Pro His Pro Leu 180 185 190 Leu Leu His Ala Ala Leu Lys Ala Ser Gly Ser Val Val Tyr Gln Phe 195 200 205 Gly Gly Leu Phe Leu His His Ser Pro Trp Pro Ser Ser Thr Thr Thr 210 215 220 Ile Ser Ser Lys Pro Gln Ser Gly Gln Ser Ser Arg Ser Leu Ser His 225 230 235 240 Ser Arg Tyr Gly Asn Val Thr Ser Val Leu Pro Pro Val Thr Gly Lys 245 250 255 Lys Ala Arg Leu Ile Arg Ile Val Leu Leu Val Gly Asn Ser His Tyr 260 265 270 Glu Glu Val Ala Thr Gly Ala Thr Ser Ala Arg Arg Leu Ile Val Glu 275 280 285 Lys Thr Asn Gln Phe Phe Ala Val Ser Cys Asp Val Ser Ser Pro Pro 290 295 300 Trp Asn Thr Val Arg Glu Gly Gly His Gly Ser Asn Gly Tyr Ser Ile 305 310 315 320 Phe Gln Thr Lys Lys Ile Val Glu Tyr His Asn Lys Asn Asn Met Leu 325 330 335 Pro Thr Pro Pro Arg Phe Ile Arg Gln Ile Thr Cys Val His Asn Cys 340 345 350 Pro Tyr Gln Ile Gly Pro Arg Ile Tyr Gln Lys Arg Val Cys His Arg 355 360 365 Pro Arg Arg Pro Arg Cys Lys Trp Cys Asn Thr Thr Glu Ala Val Ala 370 375 380 Pro Lys Lys Gln Gln Lys Thr Pro Leu Leu Tyr His Phe Arg Pro Cys 385 390 395 400 Thr Gln Pro Tyr Leu Val Pro Leu Pro Leu Leu Leu Ala Pro Asn His 405 410 415 Tyr Pro Pro Leu Leu Leu Lys Cys Leu Pro Leu His Pro Ser His Gly 420 425 430 Lys Asn Cys Leu Arg Phe Tyr Cys Cys Gln Leu Gly Ser Gly Gln Gly 435 440 445 Pro His Asp Pro Leu Leu Ala Leu Ile Gly Gly Lys Lys Asn Gln Leu 450 455 460 Ile Leu Ala Cys Leu Pro Pro Lys Val Gly Arg Arg Pro Ser Ser Leu 465 470 475 480 Tyr Gln Ile Glu Asp His Gly Gly Gly Leu Leu Ala Asn Gln Ser His 485 490 495 Asn Ala Gln Cys Tyr Ile Arg Leu His Pro Leu Pro Pro His Gln Leu 500 505 510 His Trp Lys Glu Lys Glu Leu Pro Leu Pro Pro Pro Pro Pro Arg Ala 515 520 525 Leu Pro Pro Pro Pro Pro Asp Pro Trp Ser Pro Gln Pro Pro Pro Thr 530 535 540 Lys Lys Lys Pro Leu Ala Glu Lys Ser Val Asp Tyr Arg Phe Val Phe 545 550 555 560 Ser Thr Arg Gln Leu Tyr 565 22 569 PRT Type B PWD circovirus 22 Leu Ala Ser Arg Cys Arg Cys Cys Arg Pro Leu Val Glu Ala Ala Val 1 5 10 15 His Gly Ala Leu Leu Ile Ser Ser Ala Ser Gly Leu Gly Met Phe Pro 20 25 30 Pro His Glu Ser Gln Ile Ile Arg Gly Phe Val Leu Ala Leu Phe Tyr 35 40 45 Pro Ile Lys Trp Tyr Gly Lys Ile Ile Lys Asn Asn Ala Leu Leu Thr 50 55 60 Ile Leu Phe Ser Ser Cys Arg Val Glu Leu Pro Glu Ser Ile Lys His 65 70 75 80 Leu Leu Leu Ser Lys Ile Phe His Leu Pro Ile Gln Thr Gly Ala Ala 85 90 95 Val Asp Leu Phe Arg Phe Ser Cys Ile Leu Leu Ile Phe Phe Val Ala 100 105 110 Thr Phe Phe Ala Val Gln His Leu Thr Ser Ser Arg Ser Arg Leu Ser 115 120 125 Leu Pro Thr Val Gln Arg Ser Ser His Thr Gly Gln Gln Leu Ala Pro 130 135 140 Thr Gln His Gly Asn Cys Leu Leu Val Arg Tyr Arg Lys Asp Ser Ile 145 150 155 160 Glu Ala Pro Gln Ser Phe Lys Gln Phe His Ala Pro Phe His Leu Leu 165 170 175 Thr Ile Pro Leu Ser Ile Tyr Val Asp Asn His Pro Trp Arg Pro Thr 180 185 190 Thr Phe Ala Phe Pro Ser Ser Ile Lys Cys Val Arg Phe Gly Cys Val 195 200 205 Pro Phe Trp Arg Ser Val Leu Pro Pro Ile Thr Val Met Thr Phe Phe 210 215 220 His Asn Asn Asn Ile Val Lys Ile Ala Pro Gln Gly Pro Ile Ile Gln 225 230 235 240 Ser Gln Thr Ser Ser Ile Trp Gln Ser Tyr Leu Ser Phe Thr Ser Ser 245 250 255 Tyr Arg Lys Gln Gly Ala Thr Asn Gln Asn Gly Ala Ile Leu Gly Arg 260 265 270 Gln Phe Pro Val Gly Ser Ser Asp Trp Ser Tyr Phe Ser Lys Ile Pro 275 280 285 Pro Asn Ser Gly Gln Tyr Lys Pro Leu Ile Ser Cys Phe Leu Gly Arg 290 295 300 Leu Phe Pro Ala Leu Glu Asp Gly Lys Gly Gly Trp Ala Arg Phe Lys 305 310 315 320 Trp Ile Phe Trp Ile Val Ser Asp Lys Lys Asp Ser Arg Leu Pro Lys 325 330 335 Glu Asn Leu Thr Leu His Pro Thr Lys Leu Ile Leu Asn Glu Ser Asn 340 345 350 Tyr Met Cys Pro Val Ser Ile Thr Asn Arg Thr Thr Tyr Val Thr Lys 355 360 365 Ser Arg Leu Ala Ser Ala Thr Thr Met Glu Leu Leu Lys Tyr Asp Gly 370 375 380 Cys Ser Thr Glu Lys Thr Thr Gln Asn Ser Thr Ile Leu Leu Ser Ile 385 390 395 400 Ser Leu Asn Pro Pro Leu Thr Gly Pro Thr Thr Pro Ser Pro Ser Pro 405 410 415 Pro Ile Ala Pro Pro Thr Thr Met Pro Thr Met Pro Ser Pro Gln Pro 420 425 430 Arg Gln Leu Thr Ile Met Phe Leu Leu Val Pro Ala Trp Glu Gly Thr 435 440 445 Val Arg Pro Ser Arg Pro Ala Pro Gly Ser Asn Leu Arg Leu Arg Glu 450 455 460 Glu Thr Thr Asn Leu Pro Cys Leu Ala Pro Thr Gln Gly Gly Glu Gln 465 470 475 480 Pro Phe Phe Thr Met Leu Ile Ser Asp Thr Trp Arg Gly Pro Pro Arg 485 490 495 Glu Ser Gln Pro Glu Ser Ser Leu Ile Asp Ser Pro Ala Pro Ser Ala 500 505 510 Pro Thr Ser Ser Ala Met Lys Gly Glu Gly Ala Thr Val Thr Ala Pro 515 520 525 Thr Ser Ser Gly Pro Ala Ala Ala Ser Ser Arg Ala Leu Ile Ala Ala 530 535 540 Pro Ala Thr Asp Glu Glu Glu Thr Val Gly Gly Gln Ile Arg Ile Gln 545 550 555 560 Phe Arg Phe Phe His Ala Thr Leu Ile 565 23 945 DNA Type B PWD circovirus CDS (1)..(942) 23 atg ccc agc aag aag aat gga aga agc gga ccc caa ccc cat aaa agg 48 Met Pro Ser Lys Lys Asn Gly Arg Ser Gly Pro Gln Pro His Lys Arg 1 5 10 15 tgg gtg ttc act ctg aat aat cct tcc gaa gac gag cgc aag aaa ata 96 Trp Val Phe Thr Leu Asn Asn Pro Ser Glu Asp Glu Arg Lys Lys Ile 20 25 30 cgg gat ctt cca ata tcc cta ttt gat tat ttt att gtt ggc gag gag 144 Arg Asp Leu Pro Ile Ser Leu Phe Asp Tyr Phe Ile Val Gly Glu Glu 35 40 45 ggt aat gag gaa gga cga aca cct cac ctc cag ggg ttc gct aat ttt 192 Gly Asn Glu Glu Gly Arg Thr Pro His Leu Gln Gly Phe Ala Asn Phe 50 55 60 gtg aag aag cag act ttt aat aaa gtg aag tgg tat ttg ggt gcc cgc 240 Val Lys Lys Gln Thr Phe Asn Lys Val Lys Trp Tyr Leu Gly Ala Arg 65 70 75 80 tgc cac atc gag aaa gcg aaa gga aca gat cag cag aat aaa gaa tac 288 Cys His Ile Glu Lys Ala Lys Gly Thr Asp Gln Gln Asn Lys Glu Tyr 85 90 95 tgc agt aaa gaa ggc aac tta ctg atg gag tgt gga gct cct aga tct 336 Cys Ser Lys Glu Gly Asn Leu Leu Met Glu Cys Gly Ala Pro Arg Ser 100 105 110 cag gga caa cgg agt gac ctg tct act gct gtg agt acc ttg ttg gag 384 Gln Gly Gln Arg Ser Asp Leu Ser Thr Ala Val Ser Thr Leu Leu Glu 115 120 125 agc ggg agt ctg gtg acc gtt gca gag cag cac cct gta acg ttt gtc 432 Ser Gly Ser Leu Val Thr Val Ala Glu Gln His Pro Val Thr Phe Val 130 135 140 aga aat ttc cgc ggg ctg gct gaa ctt ttg aaa gtg agc ggg aaa atg 480 Arg Asn Phe Arg Gly Leu Ala Glu Leu Leu Lys Val Ser Gly Lys Met 145 150 155 160 cag aag cgt gat tgg aag act aat gta cac gtc att gtg ggg cca cct 528 Gln Lys Arg Asp Trp Lys Thr Asn Val His Val Ile Val Gly Pro Pro 165 170 175 ggg tgt ggt aaa agc aaa tgg gct gct aat ttt gca gac ccg gaa acc 576 Gly Cys Gly Lys Ser Lys Trp Ala Ala Asn Phe Ala Asp Pro Glu Thr 180 185 190 aca tac tgg aaa cca cct aga aac aag tgg tgg gat ggt tac cat ggt 624 Thr Tyr Trp Lys Pro Pro Arg Asn Lys Trp Trp Asp Gly Tyr His Gly 195 200 205 gaa gaa gtg gtt gtt att gat gac ttt tat ggc tgg ctg ccc tgg gat 672 Glu Glu Val Val Val Ile Asp Asp Phe Tyr Gly Trp Leu Pro Trp Asp 210 215 220 gat cta ctg aga ctg tgt gat cga tat cca ttg act gta gag act aaa 720 Asp Leu Leu Arg Leu Cys Asp Arg Tyr Pro Leu Thr Val Glu Thr Lys 225 230 235 240 ggt gga act gta cct ttt ttg gcc cgc agt att ctg att acc agc aat 768 Gly Gly Thr Val Pro Phe Leu Ala Arg Ser Ile Leu Ile Thr Ser Asn 245 250 255 cag acc ccg ttg gaa tgg tac tcc tca act gct gtc cca gct gta gaa 816 Gln Thr Pro Leu Glu Trp Tyr Ser Ser Thr Ala Val Pro Ala Val Glu 260 265 270 gct ctt tat cgg agg att act tcc ttg gta ttt tgg aag aat gct aca 864 Ala Leu Tyr Arg Arg Ile Thr Ser Leu Val Phe Trp Lys Asn Ala Thr 275 280 285 gaa caa tcc acg gag gaa ggg ggc cag ttc gtc acc ctt tcc ccc cca 912 Glu Gln Ser Thr Glu Glu Gly Gly Gln Phe Val Thr Leu Ser Pro Pro 290 295 300 tgc cct gaa ttt cca tat gaa ata aat tac tga 945 Cys Pro Glu Phe Pro Tyr Glu Ile Asn Tyr 305 310 24 314 PRT Type B PWD circovirus 24 Met Pro Ser Lys Lys Asn Gly Arg Ser Gly Pro Gln Pro His Lys Arg 1 5 10 15 Trp Val Phe Thr Leu Asn Asn Pro Ser Glu Asp Glu Arg Lys Lys Ile 20 25 30 Arg Asp Leu Pro Ile Ser Leu Phe Asp Tyr Phe Ile Val Gly Glu Glu 35 40 45 Gly Asn Glu Glu Gly Arg Thr Pro His Leu Gln Gly Phe Ala Asn Phe 50 55 60 Val Lys Lys Gln Thr Phe Asn Lys Val Lys Trp Tyr Leu Gly Ala Arg 65 70 75 80 Cys His Ile Glu Lys Ala Lys Gly Thr Asp Gln Gln Asn Lys Glu Tyr 85 90 95 Cys Ser Lys Glu Gly Asn Leu Leu Met Glu Cys Gly Ala Pro Arg Ser 100 105 110 Gln Gly Gln Arg Ser Asp Leu Ser Thr Ala Val Ser Thr Leu Leu Glu 115 120 125 Ser Gly Ser Leu Val Thr Val Ala Glu Gln His Pro Val Thr Phe Val 130 135 140 Arg Asn Phe Arg Gly Leu Ala Glu Leu Leu Lys Val Ser Gly Lys Met 145 150 155 160 Gln Lys Arg Asp Trp Lys Thr Asn Val His Val Ile Val Gly Pro Pro 165 170 175 Gly Cys Gly Lys Ser Lys Trp Ala Ala Asn Phe Ala Asp Pro Glu Thr 180 185 190 Thr Tyr Trp Lys Pro Pro Arg Asn Lys Trp Trp Asp Gly Tyr His Gly 195 200 205 Glu Glu Val Val Val Ile Asp Asp Phe Tyr Gly Trp Leu Pro Trp Asp 210 215 220 Asp Leu Leu Arg Leu Cys Asp Arg Tyr Pro Leu Thr Val Glu Thr Lys 225 230 235 240 Gly Gly Thr Val Pro Phe Leu Ala Arg Ser Ile Leu Ile Thr Ser Asn 245 250 255 Gln Thr Pro Leu Glu Trp Tyr Ser Ser Thr Ala Val Pro Ala Val Glu 260 265 270 Ala Leu Tyr Arg Arg Ile Thr Ser Leu Val Phe Trp Lys Asn Ala Thr 275 280 285 Glu Gln Ser Thr Glu Glu Gly Gly Gln Phe Val Thr Leu Ser Pro Pro 290 295 300 Cys Pro Glu Phe Pro Tyr Glu Ile Asn Tyr 305 310 25 702 DNA Type B PWD circovirus CDS (1)..(699) 25 atg acg tat cca agg agg cgt tac cga aga aga aga cac cgc ccc cgc 48 Met Thr Tyr Pro Arg Arg Arg Tyr Arg Arg Arg Arg His Arg Pro Arg 1 5 10 15 agc cat ctt ggc cag atc ctc cgc cgc cgc ccc tgg ctc gtc cac ccc 96 Ser His Leu Gly Gln Ile Leu Arg Arg Arg Pro Trp Leu Val His Pro 20 25 30 cgc cac cgt tac cgc tgg aga agg aaa aat ggc atc ttc aac acc cgc 144 Arg His Arg Tyr Arg Trp Arg Arg Lys Asn Gly Ile Phe Asn Thr Arg 35 40 45 ctc tcc cgc acc ttc gga tat act gtc aag cga acc aca gtc aga acg 192 Leu Ser Arg Thr Phe Gly Tyr Thr Val Lys Arg Thr Thr Val Arg Thr 50 55 60 ccc tcc tgg gcg gtg gac atg atg aga ttc aat att aat gac ttt ctt 240 Pro Ser Trp Ala Val Asp Met Met Arg Phe Asn Ile Asn Asp Phe Leu 65 70 75 80 ccc cca gga ggg ggg tca aac ccc cgc tct gtg ccc ttt gaa tac tac 288 Pro Pro Gly Gly Gly Ser Asn Pro Arg Ser Val Pro Phe Glu Tyr Tyr 85 90 95 aga ata aga aag gtt aag gtt gaa ttc tgg ccc tgc tcc ccg atc acc 336 Arg Ile Arg Lys Val Lys Val Glu Phe Trp Pro Cys Ser Pro Ile Thr 100 105 110 cag ggt gac agg gga gtg ggc tcc agt gct gtt att tta gat gat aac 384 Gln Gly Asp Arg Gly Val Gly Ser Ser Ala Val Ile Leu Asp Asp Asn 115 120 125 ttt gta aca aag gcc aca gcc ctc acc tat gac ccc tat gta aac tac 432 Phe Val Thr Lys Ala Thr Ala Leu Thr Tyr Asp Pro Tyr Val Asn Tyr 130 135 140 tcc tcc cgc cat acc ata acc cag ccc ttc tcc tac cac tcc cgg tac 480 Ser Ser Arg His Thr Ile Thr Gln Pro Phe Ser Tyr His Ser Arg Tyr 145 150 155 160 ttt acc ccc aaa cct gtc cta gat ttc act att gat tac ttc caa cca 528 Phe Thr Pro Lys Pro Val Leu Asp Phe Thr Ile Asp Tyr Phe Gln Pro 165 170 175 aac aac aaa aga aac cag ctg tgg ctg aga cta caa act gct gga aat 576 Asn Asn Lys Arg Asn Gln Leu Trp Leu Arg Leu Gln Thr Ala Gly Asn 180 185 190 gta gac cac gta ggc ctc ggc act gcg ttc gaa aac agt ata tac gac 624 Val Asp His Val Gly Leu Gly Thr Ala Phe Glu Asn Ser Ile Tyr Asp 195 200 205 cag gaa tac aat atc cgt gta acc atg tat gta caa ttc aga gaa ttt 672 Gln Glu Tyr Asn Ile Arg Val Thr Met Tyr Val Gln Phe Arg Glu Phe 210 215 220 aat ttt aaa gac ccc cca ctt aac cct taa 702 Asn Phe Lys Asp Pro Pro Leu Asn Pro 225 230 26 233 PRT Type B PWD circovirus 26 Met Thr Tyr Pro Arg Arg Arg Tyr Arg Arg Arg Arg His Arg Pro Arg 1 5 10 15 Ser His Leu Gly Gln Ile Leu Arg Arg Arg Pro Trp Leu Val His Pro 20 25 30 Arg His Arg Tyr Arg Trp Arg Arg Lys Asn Gly Ile Phe Asn Thr Arg 35 40 45 Leu Ser Arg Thr Phe Gly Tyr Thr Val Lys Arg Thr Thr Val Arg Thr 50 55 60 Pro Ser Trp Ala Val Asp Met Met Arg Phe Asn Ile Asn Asp Phe Leu 65 70 75 80 Pro Pro Gly Gly Gly Ser Asn Pro Arg Ser Val Pro Phe Glu Tyr Tyr 85 90 95 Arg Ile Arg Lys Val Lys Val Glu Phe Trp Pro Cys Ser Pro Ile Thr 100 105 110 Gln Gly Asp Arg Gly Val Gly Ser Ser Ala Val Ile Leu Asp Asp Asn 115 120 125 Phe Val Thr Lys Ala Thr Ala Leu Thr Tyr Asp Pro Tyr Val Asn Tyr 130 135 140 Ser Ser Arg His Thr Ile Thr Gln Pro Phe Ser Tyr His Ser Arg Tyr 145 150 155 160 Phe Thr Pro Lys Pro Val Leu Asp Phe Thr Ile Asp Tyr Phe Gln Pro 165 170 175 Asn Asn Lys Arg Asn Gln Leu Trp Leu Arg Leu Gln Thr Ala Gly Asn 180 185 190 Val Asp His Val Gly Leu Gly Thr Ala Phe Glu Asn Ser Ile Tyr Asp 195 200 205 Gln Glu Tyr Asn Ile Arg Val Thr Met Tyr Val Gln Phe Arg Glu Phe 210 215 220 Asn Phe Lys Asp Pro Pro Leu Asn Pro 225 230 27 315 DNA Type B PWD circovirus CDS (1)..(312) 27 atg gta acc atc cca cca ctt gtt tct agg tgg ttt cca gta tgt ggt 48 Met Val Thr Ile Pro Pro Leu Val Ser Arg Trp Phe Pro Val Cys Gly 1 5 10 15 ttc cgg gtc tgc aaa att agc agc cca ttt gct ttt acc aca ccc agg 96 Phe Arg Val Cys Lys Ile Ser Ser Pro Phe Ala Phe Thr Thr Pro Arg 20 25 30 tgg ccc cac aat gac gtg tac att agt ctt cca atc acg ctt ctg cat 144 Trp Pro His Asn Asp Val Tyr Ile Ser Leu Pro Ile Thr Leu Leu His 35 40 45 ttt ccc gct cac ttt caa aag ttc agc cag ccc gcg gaa att tct gac 192 Phe Pro Ala His Phe Gln Lys Phe Ser Gln Pro Ala Glu Ile Ser Asp 50 55 60 aaa cgt tac agg gtg ctg ctc tgc aac ggt cac cag act ccc gct ctc 240 Lys Arg Tyr Arg Val Leu Leu Cys Asn Gly His Gln Thr Pro Ala Leu 65 70 75 80 caa caa ggt act cac agc agt aga cag gtc act ccg ttg tcc ctg aga 288 Gln Gln Gly Thr His Ser Ser Arg Gln Val Thr Pro Leu Ser Leu Arg 85 90 95 tct agg agc tcc aca ctc cat cag taa 315 Ser Arg Ser Ser Thr Leu His Gln 100 28 104 PRT Type B PWD circovirus 28 Met Val Thr Ile Pro Pro Leu Val Ser Arg Trp Phe Pro Val Cys Gly 1 5 10 15 Phe Arg Val Cys Lys Ile Ser Ser Pro Phe Ala Phe Thr Thr Pro Arg 20 25 30 Trp Pro His Asn Asp Val Tyr Ile Ser Leu Pro Ile Thr Leu Leu His 35 40 45 Phe Pro Ala His Phe Gln Lys Phe Ser Gln Pro Ala Glu Ile Ser Asp 50 55 60 Lys Arg Tyr Arg Val Leu Leu Cys Asn Gly His Gln Thr Pro Ala Leu 65 70 75 80 Gln Gln Gly Thr His Ser Ser Arg Gln Val Thr Pro Leu Ser Leu Arg 85 90 95 Ser Arg Ser Ser Thr Leu His Gln 100 29 15 PRT Type B PWD circovirus 29 Val Asp Met Met Arg Phe Asn Ile Asn Asp Phe Leu Pro Pro Gly 1 5 10 15 30 15 PRT Type B PWD circovirus 30 Gln Gly Asp Arg Gly Val Gly Ser Ser Ala Val Ile Leu Asp Asp 1 5 10 15 31 15 PRT Type B PWD circovirus 31 Gly Val Gly Ser Ser Ala Val Ile Leu Asp Asp Asn Phe Val Thr 1 5 10 15 32 15 PRT Type B PWD circovirus 32 Val Asp His Val Gly Leu Gly Thr Ala Phe Glu Asn Ser Ile Tyr 1 5 10 15 33 8 DNA Type A PWD circovirus 33 tgtggcga 8 34 8 DNA Type A PWD circovirus 34 agtttcct 8 35 20 DNA Type A PWD circovirus 35 tcatttagag ggtctttcag 20 36 8 DNA Type A PWD circovirus 36 gtcaacct 8 37 8 DNA Type A PWD circovirus 37 gtggttgc 8 38 8 DNA Type A PWD circovirus 38 agcccagg 8 39 8 DNA Type A PWD circovirus 39 ttggctgg 8 40 12 DNA Type A PWD circovirus 40 tctagctctg gt 12 41 12 DNA Type A PWD circovirus 41 atctcagctc gt 12 42 12 DNA Type A PWD circovirus 42 tgtcctcctc tt 12 43 8 DNA Type A PWD circovirus 43 tctctaga 8 44 8 DNA Type A PWD circovirus 44 tgtaccaa 8 45 8 DNA Type A PWD circovirus 45 tccgtctt 8 46 20 DNA Artificial Sequence Primer 46 gtgtgctcga cattggtgtg 20 47 20 DNA Artificial Sequence Primer 47 tggaatgtta acgagctgag 20 48 20 DNA Artificial Sequence Primer 48 ctcgcagcca tcttggaatg 20 49 20 DNA Artificial Sequence Primer 49 cgcgcgtaat acgactcact 20 50 26 DNA Artificial Sequence Primer 50 cctgtctact gctgtgagta ccttgt 26 51 26 DNA Artificial Sequence Primer 51 gcagtagaca ggtcactccg ttgtcc 26 52 20 DNA Artificial Sequence Primer 52 tggaatgtta actacctcaa 20 53 23 DNA Artificial Sequence Primer 53 ggcggcgcca tctgtaacgg ttt 23 54 23 DNA Artificial Sequence Primer 54 gatggcgccg aaagacgggt atc 23 55 15 PRT Type B PWD circovirus 55 Asn Val Asn Glu Leu Arg Phe Asn Ile Gly Gln Phe Leu Pro Pro 1 5 10 15 56 14 PRT Type A PWD circovirus 56 Thr Ser Asn Gln Arg Gly Val Gly Ser Thr Val Val Ile Leu 1 5 10 57 15 PRT Type A PWD circovirus 57 Arg Gly Val Gly Ser Thr Val Val Ile Leu Asp Ala Asn Phe Val 1 5 10 15 58 15 PRT Type B PWD circovirus 58 Phe Thr Ile Asp Tyr Phe Gln Pro Asn Asn Lys Arg Asn Gln Leu 1 5 10 15 59 15 PRT Type A PWD circovirus 59 Asp Gln Thr Ile Asp Trp Phe Gln Pro Asn Asn Lys Arg Asn Gln 1 5 10 15 60 15 PRT Type A PWD circovirus 60 Asn Val Glu His Thr Gly Leu Gly Tyr Ala Leu Gln Asn Ala Thr 1 5 10 15 61 15 PRT Type B PWD circovirus 61 His Arg Pro Arg Ser His Leu Gly Gln Ile Leu Arg Arg Arg Pro 1 5 10 15 62 15 PRT Type B PWD circovirus 62 Ser His Leu Gly Gln Ile Leu Arg Arg Arg Pro Trp Leu Val His 1 5 10 15 63 15 PRT Type B PWD circovirus 63 Gln Ile Leu Arg Arg Arg Pro Trp Leu Val His Pro Arg His Arg 1 5 10 15 64 15 PRT Type B PWD circovirus 64 Arg Arg Pro Trp Leu Val His Pro Arg His Arg Tyr Arg Trp Arg 1 5 10 15 65 15 PRT Type B PWD circovirus 65 Leu Val His Pro Arg His Arg Tyr Arg Trp Arg Arg Lys Asn Gly 1 5 10 15 66 15 PRT Type B PWD circovirus 66 Arg His Arg Tyr Arg Trp Arg Arg Lys Asn Gly Ile Phe Asn Thr 1 5 10 15 67 15 PRT Type B PWD circovirus 67 Arg Trp Arg Arg Lys Asn Gly Ile Phe Asn Thr Arg Leu Ser Arg 1 5 10 15 68 15 PRT Type B PWD circovirus 68 Lys Asn Gly Ile Phe Asn Thr Arg Leu Ser Arg Thr Phe Gly Tyr 1 5 10 15 69 15 PRT Type B PWD circovirus 69 Phe Asn Thr Arg Leu Ser Arg Thr Phe Gly Tyr Thr Val Lys Arg 1 5 10 15 70 15 PRT Type B PWD circovirus 70 Leu Ser Arg Thr Phe Gly Tyr Thr Val Lys Arg Thr Thr Val Arg 1 5 10 15 71 15 PRT Type B PWD circovirus 71 Phe Gly Tyr Thr Val Lys Arg Thr Thr Val Arg Thr Pro Ser Trp 1 5 10 15 72 15 PRT Type B PWD circovirus 72 Val Lys Arg Thr Thr Val Arg Thr Pro Ser Trp Ala Val Asp Met 1 5 10 15 73 15 PRT Type B PWD circovirus 73 Thr Val Arg Thr Pro Ser Trp Ala Val Asp Met Met Arg Phe Asn 1 5 10 15 74 15 PRT Type B PWD circovirus 74 Pro Ser Trp Ala Val Asp Met Met Arg Phe Asn Ile Asn Asp Phe 1 5 10 15 75 15 PRT Type B PWD circovirus 75 Arg Phe Asn Ile Asn Asp Phe Leu Pro Pro Gly Gly Gly Ser Asn 1 5 10 15 76 15 PRT Type B PWD circovirus 76 Asn Asp Phe Leu Pro Pro Gly Gly Gly Ser Asn Pro Arg Ser Val 1 5 10 15 77 15 PRT Type B PWD circovirus 77 Pro Pro Gly Gly Gly Ser Asn Pro Arg Ser Val Pro Phe Glu Tyr 1 5 10 15 78 15 PRT Type B PWD circovirus 78 Gly Ser Asn Pro Arg Ser Val Pro Phe Glu Tyr Tyr Arg Ile Arg 1 5 10 15 79 15 PRT Type B PWD circovirus 79 Arg Ser Val Pro Phe Glu Tyr Tyr Arg Ile Arg Lys Val Lys Val 1 5 10 15 80 15 PRT Type B PWD circovirus 80 Phe Glu Tyr Tyr Arg Ile Arg Lys Val Lys Val Glu Phe Trp Pro 1 5 10 15 81 15 PRT Type B PWD circovirus 81 Arg Ile Arg Lys Val Lys Val Glu Phe Trp Pro Cys Ser Pro Ile 1 5 10 15 82 15 PRT Type B PWD circovirus 82 Val Lys Val Glu Phe Trp Pro Cys Ser Pro Ile Thr Gln Gly Asp 1 5 10 15 83 15 PRT Type B PWD circovirus 83 Phe Trp Pro Cys Ser Pro Ile Thr Gln Gly Asp Arg Gly Val Gly 1 5 10 15 84 15 PRT Type A PWD circovirus 84 Thr Arg Pro Arg Ser His Leu Gly Asn Ile Leu Arg Arg Arg Pro 1 5 10 15 85 15 PRT Type A PWD circovirus 85 Ser His Leu Gly Asn Ile Leu Arg Arg Arg Pro Tyr Leu Val His 1 5 10 15 86 15 PRT Type A PWD circovirus 86 Asn Ile Leu Arg Arg Arg Pro Tyr Leu Val His Pro Ala Phe Arg 1 5 10 15 87 15 PRT Type A PWD circovirus 87 Arg Arg Pro Tyr Leu Val His Pro Ala Phe Arg Asn Arg Tyr Arg 1 5 10 15 88 15 PRT Type A PWD circovirus 88 Leu Val His Pro Ala Phe Arg Asn Arg Tyr Arg Trp Arg Arg Lys 1 5 10 15 89 15 PRT Type A PWD circovirus 89 Ala Phe Arg Asn Arg Tyr Arg Trp Arg Arg Lys Thr Gly Ile Phe 1 5 10 15 90 15 PRT Type A PWD circovirus 90 Arg Tyr Arg Trp Arg Arg Lys Thr Gly Ile Phe Asn Ser Arg Leu 1 5 10 15 91 15 PRT Type A PWD circovirus 91 Arg Arg Lys Thr Gly Ile Phe Asn Ser Arg Leu Ser Arg Glu Phe 1 5 10 15 92 15 PRT Type A PWD circovirus 92 Gly Ile Phe Asn Ser Arg Leu Ser Arg Glu Phe Val Leu Thr Ile 1 5 10 15 93 15 PRT Type A PWD circovirus 93 Ser Arg Leu Ser Arg Glu Phe Val Leu Thr Ile Arg Gly Gly His 1 5 10 15 94 15 PRT Type A PWD circovirus 94 Arg Glu Phe Val Leu Thr Ile Arg Gly Gly His Ser Gln Pro Ser 1 5 10 15 95 15 PRT Type A PWD circovirus 95 Leu Thr Ile Arg Gly Gly His Ser Gln Pro Ser Trp Asn Val Asn 1 5 10 15 96 15 PRT Type A PWD circovirus 96 Gly Gly His Ser Gln Pro Ser Trp Asn Val Asn Glu Leu Arg Phe 1 5 10 15 97 15 PRT Type A PWD circovirus 97 Gln Pro Ser Trp Asn Val Asn Glu Leu Arg Phe Asn Ile Gly Gln 1 5 10 15 98 15 PRT Type A PWD circovirus 98 Asn Val Asn Glu Leu Arg Phe Asn Ile Gly Gln Phe Leu Pro Pro 1 5 10 15 99 15 PRT Type A PWD circovirus 99 Leu Arg Phe Asn Ile Gly Gln Phe Leu Pro Pro Ser Gly Gly Thr 1 5 10 15 100 15 PRT Type A PWD circovirus 100 Ile Gly Gln Phe Leu Pro Pro Ser Gly Gly Thr Asn Pro Leu Pro 1 5 10 15 101 15 PRT Type A PWD circovirus 101 Leu Pro Pro Ser Gly Gly Thr Asn Pro Leu Pro Leu Pro Phe Gln 1 5 10 15 102 15 PRT Type A PWD circovirus 102 Gly Gly Thr Asn Pro Leu Pro Leu Pro Phe Gln Tyr Tyr Arg Ile 1 5 10 15 103 15 PRT Type A PWD circovirus 103 Pro Leu Pro Leu Pro Phe Gln Tyr Tyr Arg Ile Arg Lys Ala Lys 1 5 10 15 104 15 PRT Type A PWD circovirus 104 Pro Phe Gln Tyr Tyr Arg Ile Arg Lys Ala Lys Tyr Glu Phe Tyr 1 5 10 15 105 15 PRT Type A PWD circovirus 105 Tyr Arg Ile Arg Lys Ala Lys Tyr Glu Phe Tyr Pro Arg Asp Pro 1 5 10 15 106 15 PRT Type A PWD circovirus 106 Lys Ala Lys Tyr Glu Phe Tyr Pro Arg Asp Pro Ile Thr Ser Asn 1 5 10 15 107 15 PRT Type A PWD circovirus 107 Glu Phe Tyr Pro Arg Asp Pro Ile Thr Ser Asn Gln Arg Gly Val 1 5 10 15 108 15 PRT Type A PWD circovirus 108 Arg Asp Pro Ile Thr Ser Asn Gln Arg Gly Val Gly Ser Thr Val 1 5 10 15 109 15 PRT Type A PWD circovirus 109 Thr Ser Asn Gln Arg Gly Val Gly Ser Thr Val Val Ile Leu Asp 1 5 10 15 110 15 PRT Type B PWD circovirus 110 Gly Val Gly Ser Ser Ala Val Ile Leu Asp Asp Asn Phe Val Thr 1 5 10 15 111 15 PRT Type B PWD circovirus 111 Ser Ala Val Ile Leu Asp Asp Asn Phe Val Thr Lys Ala Thr Ala 1 5 10 15 112 15 PRT Type B PWD circovirus 112 Leu Asp Asp Asn Phe Val Thr Lys Ala Thr Ala Leu Thr Tyr Asp 1 5 10 15 113 15 PRT Type B PWD circovirus 113 Phe Val Thr Lys Ala Thr Ala Leu Thr Tyr Asp Pro Tyr Val Asn 1 5 10 15 114 15 PRT Type B PWD circovirus 114 Ala Thr Ala Leu Thr Tyr Asp Pro Tyr Val Asn Tyr Ser Ser Arg 1 5 10 15 115 15 PRT Type B PWD circovirus 115 Thr Tyr Asp Pro Tyr Val Asn Tyr Ser Ser Arg His Thr Ile Thr 1 5 10 15 116 15 PRT Type B PWD circovirus 116 Tyr Val Asn Tyr Ser Ser Arg His Thr Ile Thr Gln Pro Phe Ser 1 5 10 15 117 15 PRT Type B PWD circovirus 117 Ser Ser Arg His Thr Ile Thr Gln Pro Phe Ser Tyr His Ser Arg 1 5 10 15 118 15 PRT Type B PWD circovirus 118 Thr Ile Thr Gln Pro Phe Ser Tyr His Ser Arg Tyr Phe Thr Pro 1 5 10 15 119 15 PRT Type B PWD circovirus 119 Pro Phe Ser Tyr His Ser Arg Tyr Phe Thr Pro Lys Pro Val Leu 1 5 10 15 120 15 PRT Type B PWD circovirus 120 His Ser Arg Tyr Phe Thr Pro Lys Pro Val Leu Asp Phe Thr Ile 1 5 10 15 121 15 PRT Type B PWD circovirus 121 Phe Thr Pro Lys Pro Val Leu Asp Phe Thr Ile Asp Tyr Phe Gln 1 5 10 15 122 15 PRT Type B PWD circovirus 122 Pro Val Leu Asp Phe Thr Ile Asp Tyr Phe Gln Pro Asn Asn Lys 1 5 10 15 123 15 PRT Type B PWD circovirus 123 Phe Thr Ile Asp Tyr Phe Gln Pro Asn Asn Lys Arg Asn Gln Leu 1 5 10 15 124 15 PRT Type B PWD circovirus 124 Tyr Phe Gln Pro Asn Asn Lys Arg Asn Gln Leu Trp Leu Arg Leu 1 5 10 15 125 15 PRT Type B PWD circovirus 125 Asn Asn Lys Arg Asn Gln Leu Trp Leu Arg Leu Gln Thr Ala Gly 1 5 10 15 126 15 PRT Type B PWD circovirus 126 Asn Gln Leu Trp Leu Arg Leu Gln Thr Ala Gly Asn Val Asp His 1 5 10 15 127 15 PRT Type B PWD circovirus 127 Leu Arg Leu Gln Thr Ala Gly Asn Val Asp His Val Gly Leu Gly 1 5 10 15 128 15 PRT Type B PWD circovirus 128 Thr Ala Gly Asn Val Asp His Val Gly Leu Gly Thr Ala Phe Glu 1 5 10 15 129 15 PRT Type B PWD circovirus 129 Gly Leu Gly Thr Ala Phe Glu Asn Ser Ile Tyr Asp Gln Glu Tyr 1 5 10 15 130 15 PRT Type B PWD circovirus 130 Ala Phe Glu Asn Ser Ile Tyr Asp Gln Glu Tyr Asn Ile Arg Val 1 5 10 15 131 15 PRT Type B PWD circovirus 131 Ser Ile Tyr Asp Gln Glu Tyr Asn Ile Arg Val Thr Met Tyr Val 1 5 10 15 132 15 PRT Type B PWD circovirus 132 Gln Glu Tyr Asn Ile Arg Val Thr Met Tyr Val Gln Phe Arg Glu 1 5 10 15 133 15 PRT Type B PWD circovirus 133 Ile Arg Val Thr Met Tyr Val Gln Phe Arg Glu Phe Asn Phe Lys 1 5 10 15 134 15 PRT Type B PWD circovirus 134 Met Tyr Val Gln Phe Arg Glu Phe Asn Phe Lys Asp Pro Pro Leu 1 5 10 15 135 15 PRT Type B PWD circovirus 135 Val Gln Phe Arg Glu Phe Asn Phe Lys Asp Pro Pro Leu Asn Pro 1 5 10 15 136 15 PRT Type A PWD circovirus 136 Arg Gly Val Gly Ser Thr Val Val Ile Leu Asp Ala Asn Phe Val 1 5 10 15 137 15 PRT Type A PWD circovirus 137 Ser Thr Val Val Ile Leu Asp Ala Asn Phe Val Thr Pro Ser Thr 1 5 10 15 138 15 PRT Type A PWD circovirus 138 Ile Leu Asp Ala Asn Phe Val Thr Pro Ser Thr Asn Leu Ala Tyr 1 5 10 15 139 15 PRT Type A PWD circovirus 139 Asn Phe Val Thr Pro Ser Thr Asn Leu Ala Tyr Asp Pro Tyr Ile 1 5 10 15 140 15 PRT Type A PWD circovirus 140 Pro Ser Thr Asn Leu Ala Tyr Asp Pro Tyr Ile Asn Tyr Ser Ser 1 5 10 15 141 15 PRT Type A PWD circovirus 141 Leu Ala Tyr Asp Pro Tyr Ile Asn Tyr Ser Ser Arg His Thr Ile 1 5 10 15 142 15 PRT Type A PWD circovirus 142 Pro Tyr Ile Asn Tyr Ser Ser Arg His Thr Ile Arg Gln Pro Phe 1 5 10 15 143 15 PRT Type A PWD circovirus 143 Tyr Ser Ser Arg His Thr Ile Arg Gln Pro Phe Thr Tyr His Ser 1 5 10 15 144 15 PRT Type A PWD circovirus 144 His Thr Ile Arg Gln Pro Phe Thr Tyr His Ser Arg Tyr Phe Thr 1 5 10 15 145 15 PRT Type A PWD circovirus 145 Gln Pro Phe Thr Tyr His Ser Arg Tyr Phe Thr Pro Lys Pro Glu 1 5 10 15 146 15 PRT Type A PWD circovirus 146 Tyr His Ser Arg Tyr Phe Thr Pro Lys Pro Glu Leu Asp Gln Thr 1 5 10 15 147 15 PRT Type A PWD circovirus 147 Tyr Phe Thr Pro Lys Pro Glu Leu Asp Gln Thr Ile Asp Trp Phe 1 5 10 15 148 15 PRT Type A PWD circovirus 148 Lys Pro Glu Leu Asp Gln Thr Ile Asp Trp Phe Gln Pro Asn Asn 1 5 10 15 149 15 PRT Type A PWD circovirus 149 Asp Gln Thr Ile Asp Trp Phe Gln Pro Asn Asn Lys Arg Asn Gln 1 5 10 15 150 15 PRT Type A PWD circovirus 150 Asp Trp Phe Gln Pro Asn Asn Lys Arg Asn Gln Leu Trp Leu His 1 5 10 15 151 15 PRT Type A PWD circovirus 151 Pro Asn Asn Lys Arg Asn Gln Leu Trp Leu His Leu Asn Thr His 1 5 10 15 152 15 PRT Type A PWD circovirus 152 Arg Asn Gln Leu Trp Leu His Leu Asn Thr His Thr Asn Val Glu 1 5 10 15 153 15 PRT Type A PWD circovirus 153 Trp Leu His Leu Asn Thr His Thr Asn Val Glu His Thr Gly Leu 1 5 10 15 154 15 PRT Type A PWD circovirus 154 Asn Thr His Thr Asn Val Glu His Thr Gly Leu Gly Tyr Ala Leu 1 5 10 15 155 15 PRT Type A PWD circovirus 155 Asn Val Glu His Thr Gly Leu Gly Tyr Ala Leu Gln Asn Ala Thr 1 5 10 15 156 15 PRT Type A PWD circovirus 156 Thr Gly Leu Gly Tyr Ala Leu Gln Asn Ala Thr Thr Ala Gln Asn 1 5 10 15 157 15 PRT Type A PWD circovirus 157 Tyr Ala Leu Gln Asn Ala Thr Thr Ala Gln Asn Tyr Val Val Arg 1 5 10 15 158 15 PRT Type A PWD circovirus 158 Asn Ala Thr Thr Ala Gln Asn Tyr Val Val Arg Leu Thr Ile Tyr 1 5 10 15 159 15 PRT Type A PWD circovirus 159 Ala Gln Asn Tyr Val Val Arg Leu Thr Ile Tyr Val Gln Phe Arg 1 5 10 15 160 15 PRT Type A PWD circovirus 160 Val Val Arg Leu Thr Ile Tyr Val Gln Phe Arg Glu Phe Ile Leu 1 5 10 15 161 15 PRT Type A PWD circovirus 161 Thr Ile Tyr Val Gln Phe Arg Glu Phe Ile Leu Lys Asp Pro Leu 1 5 10 15 162 15 PRT Type A PWD circovirus 162 Tyr Val Gln Phe Arg Glu Phe Ile Leu Lys Asp Pro Leu Asn Glu 1 5 10 15 163 1759 DNA Type A PWD circovirus 163 accagcgcac ttcggcagcg gcagcacctc ggcagcgtca gtgaaaatgc caagcaagaa 60 aagcggcccg caaccccata agaggtgggt gttcaccctt aataatcctt ccgaggagga 120 gaaaaacaaa atacgggagc ttccaatctc cctttttgat tattttgttt gcggagagga 180 aggtttggaa gagggtagaa ctcctcacct ccaggggttt gcgaattttg ctaagaagca 240 gacttttaac aaggtgaagt ggtattttgg tgcccgctgc cacatcgaga aagcgaaagg 300 aaccgaccag cagaataaag aatactgcag taaagaaggc cacatactta tcgagtgtgg 360 agctccgcgg aaccagggga agcgcagcga cctgtctact gctgtgagta cccttttgga 420 gacggggtct ttggtgactg tagccgagca gttccctgta acgtatgtga gaaatttccg 480 cgggctggct gaacttttga aagtgagcgg gaagatgcag aagcgtgatt ggaagacagc 540 tgtacacgtc atagtgggcc cgcccggttg tgggaagagc cagtgggccc gtaattttgc 600 tgagcctagg gacacctact ggaagcctag tagaaataag tggtgggatg gatatcatgg 660 agaagaagtt gttgttttgg atgattttta tggctggtta ccttgggatg atctactgag 720 actgtgtgac cggtatccat tgactgtaga gactaaaggg ggtactgttc cttttttggc 780 ccgcagtatt ttgattacca gcaatcaggc cccccaggaa tggtactcct caactgctgt 840 cccagctgta gaagctctct atcggaggat tactactttg caattttgga agactgctgg 900 agaacaatcc acggaggtac ccgaaggccg atttgaagca gtggacccac cctgtgccct 960 tttcccatat aaaataaatt actgagtctt ttttgttatc acatcgtaat ggtttttatt 1020 tttatttatt tagagggtct tttaggataa attctctgaa ttgtacataa atagtcagcc 1080 ttaccacata attttgggct gtggttgcat tttggagcgc atagcccagg cctgtgtgct 1140 cgacattggt gtgggtattt aaatggagcc acagctggtt tcttttatta tttgggtgga 1200 accaatcaat tgtttggtcc agctcaggtt tgggggtgaa gtacctggag tggtaggtaa 1260 agggctgcct tatggtgtgg cgggaggagt agttaatata ggggtcatag gccaagttgg 1320 tggagggggt tacaaagttg gcatccaaga taacaacagt ggacccaaca cctctttgat 1380 tagaggtgat ggggtctctg gggtaaaatt catatttagc ctttctaata cggtagtatt 1440 ggaaaggtag gggtaggggg ttggtgccgc ctgagggggg gaggaactgg ccgatgttga 1500 atttcagcta gttaacattc caagatggct gcgagtatcc tccttttatg gtgagtacaa 1560 attctgtaga aaggcgggaa ttgaagatac ccgtctttcg gcgccatctg taacggtttc 1620 tgaaggcggg gtgtgccaaa tatggtcttc tccggaggat gtttccaaga tggctgcggg 1680 ggcgggtcct tcttctgcgg taacgcctcc ttggccacgt catcctataa aagtgaaaga 1740 agtgcgctgc tgtagtatt 1759 164 1759 DNA Type A PWD circovirus 164 accagcgcac ttcggcagcg gcagcacctc ggcagcgtca gtgaaaatgc caagcaagaa 60 aagcggcccg caaccccata agaggtgggt gttcaccctt aataatcctt ccgaggagga 120 gaaaaacaaa atacgggagc ttccaatctc cctttttgat tattttgttt gcggagagga 180 aggtttggaa gagggtagaa ctcctcacct ccaggggttt gctaattttg ctaagaagca 240 gacttttaac aaggtgaagt ggtattttgg tgcccgctgc cacatcgaga aagcgaaagg 300 aaccgaccag cagaataaag aatactgcag taaagaaggc cacatactta tcgagtgtgg 360 agctccgcgg aaccagggga agcgcagcga cctgtctact gctgtgagta cccttttgga 420 gacggggtct ttggtgactg tagccgagca gttccctgta acgtatgtga gaaatttccg 480 cgggctggct gaacttttga aagtgagcgg gaagatgcag aagcgtgatt ggaagacagc 540 tgtacacgtc atagtgggcc cgcccggttg tgggaagagc cagtgggccc gtaattttgc 600 tgagcctagc gacacctact ggaagcctag tagaaataag tggtgggatg gatatcatgg 660 agaagaagtt gttgttttgg atgattttta tggctggtta ccttgggatg atctactgag 720 actgtgtgac cggtatccat tgactgtaga gactaaaggc ggtactgttc cttttttggc 780 tcgcagtatt ttgattacca gcaatcaggc cccccaggaa tggtactcct caactgctgt 840 cccagctgta gaagctctct atcggaggat tactactttg caattttgga agactgctgg 900 agaacaatca acggaggtac ccgaaggccg atttgaagca gtggacccac cctgtgccct 960 tttcccatat aaaataaatt actgagtctt ttttgttatc acatcgtaat ggtttttatt 1020 tttatttatt tagagggtct tttaggataa attctctgaa ttgtacataa atagtcagcc 1080 ttaccacata attttgggct gtggttgcat tttggagcgc atagcccagg cctgtgtgct 1140 cgacattggt gtgggtattt aaatggagcc acagctggtt tcttttatta tttgggtgga 1200 accattcaat tgtttggtcc agctcaggtt tgggggtgaa gtacctggag tggtaggtaa 1260 agggctgcct tatggtgtgg cgggaggagt agttaatata ggggtcatag gccaagttgg 1320 tggagggggt tacaaagttg gcatccaaga taacaacagt ggacccaaca cctctttcat 1380 tagaggtgat ggggtctctg gggtaaaatt catatttagc ctttctaata cggtagtatt 1440 ggaaaggtag gggtaggggg ttggtgccgc ctgagggggg gaggaactgg ccgatgttga 1500 atctgaggtg gttaacatgc caagatggct gcgagtatcc tccttttatg gtgattacaa 1560 attctttaga aaggcggcaa ttgaagatac ccgtctttcg gcgccatctg taacggtttc 1620 tgaaggcggg gtgtgccaaa tatggtcttc tccggaggat gtttccaaga tggctgcggg 1680 ggcgggtcct tcttctgcgg taacgcctcc ttggccacgt catcctataa aagtgaaaga 1740 agtgcgctgc tgtagtatt 1759 165 312 PRT Type A PWD circovirus 165 Met Pro Ser Lys Lys Ser Gly Pro Gln Pro His Lys Arg Trp Val Phe 1 5 10 15 Thr Leu Asn Asn Pro Ser Gly Gly Gly Lys Asn Lys Ile Arg Gly Leu 20 25 30 Pro Ile Ser Leu Phe Asp Tyr Phe Val Cys Gly Gly Gly Gly Leu Gly 35 40 45 Gly Gly Arg Thr Pro His Leu Gln Gly Phe Ala Asn Phe Ala Lys Lys 50 55 60 Gln Thr Phe Asn Lys Val Lys Trp Tyr Phe Gly Ala Arg Cys His Ile 65 70 75 80 Gly Lys Ala Lys Gly Thr Asp Gln Gln Asn Lys Gly Tyr Cys Ser Lys 85 90 95 Gly Gly His Ile Leu Ile Gly Cys Gly Ala Pro Arg Asn Gln Gly Lys 100 105 110 Arg Ser Asp Leu Ser Thr Ala Val Ser Thr Leu Leu Gly Thr Gly Ser 115 120 125 Leu Val Thr Val Ala Gly Gln Phe Pro Val Thr Tyr Val Arg Asn Phe 130 135 140 Arg Gly Leu Ala Gly Leu Leu Lys Val Ser Gly Lys Met Gln Gln Arg 145 150 155 160 Asp Trp Lys Thr Ala Val His Val Ile Val Gly Pro Pro Gly Cys Gly 165 170 175 Lys Ser Gln Trp Ala Arg Asn Phe Ala Gly Pro Arg Asp Thr Tyr Trp 180 185 190 Lys Pro Ser Arg Asn Lys Trp Trp Asp Gly Tyr His Gly Gly Gly Val 195 200 205 Val Val Leu Asp Asp Phe Tyr Gly Trp Leu Pro Trp Asp Asp Leu Leu 210 215 220 Arg Leu Cys Asp Arg Tyr Pro Leu Thr Val Gly Thr Lys Gly Gly Thr 225 230 235 240 Val Pro Phe Leu Ala Arg Ser Ile Leu Ile Thr Ser Asn Gln Ala Pro 245 250 255 Gln Gly Trp Tyr Ser Ser Thr Ala Val Pro Ala Val Gly Ala Leu Tyr 260 265 270 Arg Arg Ile Thr Thr Leu Gln Phe Trp Lys Thr Ala Gly Gly Gln Ser 275 280 285 Thr Gly Val Pro Gly Gly Arg Phe Gly Ala Val Asp Pro Pro Cys Ala 290 295 300 Leu Phe Pro Tyr Lys Ile Asn Tyr 305 310 166 312 PRT Type A PWD circovirus 166 Met Pro Ser Lys Lys Ser Gly Pro Gln Pro His Lys Arg Trp Val Phe 1 5 10 15 Thr Leu Asn Asn Pro Ser Gly Gly Gly Lys Asn Lys Ile Arg Gly Leu 20 25 30 Pro Ile Ser Leu Phe Asp Tyr Phe Val Cys Gly Gly Gly Gly Leu Gly 35 40 45 Gly Gly Arg Thr Ala His Leu Gln Gly Phe Ala Asn Phe Ala Lys Lys 50 55 60 Gln Thr Phe Asn Lys Val Lys Trp Tyr Phe Gly Ala Arg Cys His Ile 65 70 75 80 Gly Lys Ala Lys Gly Thr Asp Gln Gln Asn Lys Gly Tyr Cys Ser Lys 85 90 95 Gly Gly His Ile Leu Ile Gly Cys Gly Ala Pro Arg Asn Gln Gly Lys 100 105 110 Arg Ser Asp Leu Ser Thr Ala Val Ser Thr Leu Leu Gly Thr Gly Ser 115 120 125 Leu Val Thr Val Ala Gly Gln Phe Pro Val Thr Tyr Val Arg Asn Phe 130 135 140 Arg Gly Leu Ala Gly Leu Leu Lys Val Ser Gly Lys Met Gln Gln Arg 145 150 155 160 Asp Trp Lys Thr Ala Val His Val Ile Val Gly Pro Pro Gly Cys Gly 165 170 175 Lys Ser Gln Trp Ala Arg Asn Phe Ala Gly Pro Ser Asp Thr Tyr Trp 180 185 190 Lys Pro Ser Arg Asn Lys Trp Trp Asp Gly Tyr His Gly Gly Gly Val 195 200 205 Val Val Leu Asp Asp Phe Tyr Gly Trp Leu Pro Trp Asp Asp Leu Leu 210 215 220 Arg Leu Cys Asp Arg Tyr Pro Leu Thr Val Gly Thr Lys Gly Gly Thr 225 230 235 240 Val Pro Phe Leu Ala Arg Ser Ile Leu Ile Thr Ser Asn Gln Ala Pro 245 250 255 Gln Gly Trp Tyr Ser Ser Thr Ala Val Pro Ala Val Gly Ala Leu Tyr 260 265 270 Arg Arg Ile Thr Thr Leu Gln Phe Trp Lys Thr Ala Gly Gly Gln Ser 275 280 285 Thr Gly Val Pro Gly Gly Arg Phe Gly Ala Val Asp Pro Pro Cys Ala 290 295 300 Leu Phe Pro Tyr Lys Ile Asn Tyr 305 310 167 233 PRT Type A PWD circovirus 167 Met Thr Trp Pro Arg Arg Arg Tyr Arg Arg Arg Arg Thr Arg Pro Arg 1 5 10 15 Ser His Leu Gly Asn Ile Leu Arg Arg Arg Pro Tyr Leu Ala His Pro 20 25 30 Ala Phe Arg Asn Arg Tyr Arg Trp Arg Arg Lys Thr Gly Ile Phe Asn 35 40 45 Ser Arg Leu Ser Thr Glu Phe Val Leu Thr Ile Arg Gly Gly His Ser 50 55 60 Gln Pro Ser Trp Asn Val Asn Tyr Leu Lys Phe Asn Ile Gly Gln Phe 65 70 75 80 Leu Pro Pro Ser Gly Gly Thr Asn Pro Leu Pro Leu Pro Phe Gln Tyr 85 90 95 Tyr Arg Ile Arg Lys Ala Lys Tyr Glu Phe Tyr Pro Arg Asp Pro Ile 100 105 110 Thr Ser Asn Gln Arg Gly Val Gly Ser Thr Val Val Ile Leu Asp Ala 115 120 125 Asn Phe Val Thr Pro Ser Thr Asn Leu Ala Tyr Asp Pro Tyr Ile Asn 130 135 140 Tyr Ser Ser Arg His Thr Ile Arg Gln Pro Phe Thr Tyr His Ser Arg 145 150 155 160 Tyr Phe Thr Pro Lys Pro Glu Leu Asp Gln Thr Ile Asp Trp Phe His 165 170 175 Pro Asn Asn Lys Arg Asn Gln Leu Trp Leu His Leu Asn Thr His Thr 180 185 190 Asn Val Glu His Thr Gly Leu Gly Tyr Ala Leu Gln Asn Ala Ala Thr 195 200 205 Ala Gln Asn Tyr Val Val Arg Leu Thr Ile Tyr Val Gln Phe Arg Glu 210 215 220 Phe Ile Leu Lys Asp Pro Leu Asn Lys 225 230 168 233 PRT Type A PWD circovirus 168 Met Thr Trp Pro Arg Arg Arg Tyr Arg Arg Arg Arg Thr Arg Pro Arg 1 5 10 15 Ser His Leu Gly Asn Ile Leu Arg Arg Arg Pro Tyr Leu Val His Pro 20 25 30 Ala Phe Arg Asn Arg Tyr Arg Trp Arg Arg Lys Thr Gly Ile Phe Asn 35 40 45 Cys Arg Leu Ser Lys Glu Phe Val Ile Thr Ile Arg Gly Gly His Ser 50 55 60 Gln Pro Ser Trp Ile Val Asn Ile Leu Arg Phe Asn Ile Gly Gln Phe 65 70 75 80 Leu Pro Pro Ser Gly Gly Thr Asn Pro Leu Pro Leu Pro Phe Gln Tyr 85 90 95 Tyr Arg Ile Arg Lys Ala Lys Tyr Glu Phe Tyr Pro Arg Asp Pro Ile 100 105 110 Thr Ser Asn Glu Arg Gly Val Gly Ser Thr Val Val Ile Leu Asp Ala 115 120 125 Asn Phe Val Thr Pro Ser Thr Asn Leu Ala Tyr Asp Pro Tyr Ile Asn 130 135 140 Tyr Ser Ser Arg His Thr Ile Arg Gln Pro Phe Thr Tyr His Ser Arg 145 150 155 160 Tyr Phe Thr Pro Lys Pro Glu Leu Asp Gln Thr Ile Glu Trp Phe His 165 170 175 Pro Asn Asn Lys Arg Asn Gln Leu Trp Leu His Leu Asn Thr His Thr 180 185 190 Asn Val Glu His Thr Gly Leu Gly Tyr Ala Leu Gln Asn Ala Ala Thr 195 200 205 Ala Gln Asn Tyr Val Val Arg Leu Thr Ile Tyr Val Gln Phe Arg Glu 210 215 220 Phe Ile Leu Lys Asp Pro Leu Asn Lys 225 230 169 206 PRT Type A PWD circovirus 169 Met Ile Ser Ile Pro Pro Leu Ile Ser Thr Arg Leu Pro Val Gly Val 1 5 10 15 Pro Arg Leu Ser Lys Ile Thr Gly Pro Leu Ala Leu Pro Thr Thr Gly 20 25 30 Arg Ala His Tyr Asp Val Tyr Ser Cys Leu Pro Ile Thr Leu Leu His 35 40 45 Leu Pro Ala His Phe Gln Lys Phe Ser Gln Pro Ala Glu Ile Ser His 50 55 60 Ile Arg Tyr Arg Glu Leu Leu Gly Tyr Ser His Gln Arg Pro Arg Leu 65 70 75 80 Gln Lys Gly Thr His Ser Ser Arg Gln Val Ala Ala Leu Pro Leu Val 85 90 95 Pro Arg Ser Ser Thr Leu Asp Lys Tyr Val Ala Phe Phe Thr Ala Val 100 105 110 Phe Phe Ile Leu Leu Val Gly Ser Phe Arg Phe Leu Asp Val Ala Ala 115 120 125 Gly Thr Lys Ile Pro Leu His Leu Val Lys Ser Leu Leu Leu Ser Lys 130 135 140 Ile Arg Lys Pro Leu Glu Val Arg Ser Ser Thr Leu Phe Gln Thr Phe 145 150 155 160 Leu Ser Ala Asn Lys Ile Ile Lys Lys Gly Asp Trp Lys Leu Pro Tyr 165 170 175 Phe Val Phe Leu Leu Leu Gly Arg Ile Ile Lys Gly Glu His Pro Pro 180 185 190 Leu Met Gly Leu Arg Ala Ala Phe Leu Ala Trp His Phe His 195 200 205 170 206 PRT Type A PWD circovirus 170 Met Ile Ser Ile Pro Pro Leu Ile Ser Thr Arg Leu Pro Val Gly Val 1 5 10 15 Ala Arg Leu Ser Lys Ile Thr Gly Pro Leu Ala Leu Pro Thr Thr Gly 20 25 30 Arg Ala His Tyr Asp Val Tyr Ser Cys Leu Pro Ile Thr Leu Leu His 35 40 45 Leu Pro Ala His Phe Gln Lys Phe Ser Gln Pro Ala Glu Ile Ser His 50 55 60 Ile Arg Tyr Arg Glu Leu Leu Gly Tyr Ser His Gln Arg Pro Arg Leu 65 70 75 80 Gln Lys Gly Thr His Ser Ser Arg Gln Val Ala Ala Leu Pro Leu Val 85 90 95 Pro Arg Ser Ser Thr Leu Asp Lys Tyr Val Ala Phe Phe Thr Ala Val 100 105 110 Phe Phe Ile Leu Leu Val Gly Ser Phe Arg Phe Leu Asp Val Ala Ala 115 120 125 Gly Thr Lys Ile Pro Leu His Leu Val Lys Ser Leu Leu Leu Ser Lys 130 135 140 Ile Arg Lys Pro Leu Glu Val Ser Ser Ser Thr Leu Phe Gln Thr Phe 145 150 155 160 Leu Ser Ala Asn Lys Ile Ile Lys Lys Gly Asp Trp Lys Leu Pro Tyr 165 170 175 Phe Val Phe Leu Leu Leu Gly Arg Ile Ile Lys Gly Glu His Pro Pro 180 185 190 Leu Met Gly Leu Arg Ala Ala Phe Leu Ala Trp His Phe His 195 200 205 171 15 PRT Type B PWD circovirus 171 Met Thr Tyr Pro Arg Arg Arg Tyr Arg Arg Arg Arg His Arg Pro 1 5 10 15 172 15 PRT Type B PWD circovirus 172 Arg Arg Arg Tyr Arg Arg Arg Arg His Arg Pro Arg Ser His Leu 1 5 10 15 173 15 PRT Type B PWD circovirus 173 Arg Arg Arg Arg His Arg Pro Arg Ser His Leu Gly Gln Ile Leu 1 5 10 15 174 15 PRT Type B PWD circovirus 174 Ser Pro Ile Thr Gln Gly Asp Arg Gly Val Gly Ser Ser Ala Val 1 5 10 15 175 15 PRT Type B PWD circovirus 175 Met Thr Trp Pro Arg Arg Arg Tyr Arg Arg Arg Arg Thr Arg Pro 1 5 10 15 176 15 PRT Type B PWD circovirus 176 Arg Arg Arg Tyr Arg Arg Arg Arg Thr Arg Pro Arg Ser His Leu 1 5 10 15 177 15 PRT Type B PWD circovirus 177 Arg Arg Arg Arg Thr Arg Pro Arg Ser His Leu Gly Asn Ile Leu 1 5 10 15 US 20100189744 A1 20100729 US 12732318 20100326 12 20060101 A
A
61 K 39 12 F I 20100729 US B H
20060101 A
A
61 P 31 20 L I 20100729 US B H
US 4242041 PAPILLOMAVIRUS VACCINE COMPOSITIONS US 12074783 00 20080306 US 7709010 A US 12732318 US 60906147 00 20070309 Bryan Janine T.
Furlong PA US
omitted US
Brownlow Michelle K.
Jamison PA US
omitted US
Shi Li
Marlborough MA US
omitted US
Casimiro Danilo
Harleysville PA US
omitted US
McClements William L.
Doylestown PA US
omitted US
MERCK
P O BOX 2000 RAHWAY NJ 07065-0907 US

The present invention relates to pharmaceutical compositions comprising virus-like particles (VLPs) of HPV, said VLPs adsorbed to an aluminum adjuvant, and an ISCOM-type adjuvant comprising a saponin, cholesterol, and a phospholipid. In preferred embodiments, the aluminum adjuvant comprises amorphous aluminum hydroxyphosphate sulfate. Another aspect of the invention provides multi-dose HPV vaccine formulations comprising HPV VLPs and an antimicrobial preservative selected from the group consisting of: m-cresol, phenol and benzyl alcohol. Also provided are methods of using the disclosed pharmaceutical compositions and formulations to induce an immune response against HPV in a human patient and to prevent HPV infection.

CROSS-REFERENCE TO RELATED APPLICATIONS

This application claims priority to U.S. Ser. No. 60/906,147, filed Mar. 9, 2007, which is herein incorporated by reference in its entirety.

FIELD OF THE INVENTION

The present invention relates generally to the prevention of human papillomavirus (HPV) infection. More specifically, the invention relates to pharmaceutical compositions and formulations comprising virus-like particles (VLPs) of HPV, said VLPs adsorbed to an aluminum adjuvant, and a second adjuvant comprising a saponin, cholesterol, and a phospholipid. The invention also relates to pharmaceutical compositions and formulations comprising HPV VLPs and an antimicrobial preservative. Further provided are methods of using the disclosed pharmaceutical composition and formulations.

BACKGROUND OF THE INVENTION

There are more than 80 types of human papillomavirus (HPV), many of which have been associated with pathologies ranging from benign proliferative warts to malignant carcinomas of the cervix (for review, see McMurray et al., Int. J. Exp. Pathol. 82(1): 15-33 (2001)). HPV types 6 and 11 are termed “low-risk” and are the HPV types which are most commonly associated with benign warts, nonmalignant condyloma acuminata and/or low-grade dysplasia of the genital or respiratory mucosa. Approximately 90% of genital warts are caused by these two HPV types. In contrast, HPV 16 and HPV 18 are termed “high-risk” HPV types because they are most frequently associated with in situ and invasive carcinomas of the cervix, vagina, vulva and anal canal. More than 70% of cervical carcinomas are caused by infections with HPV16 and HPV18. Together with the less prevalent oncogenic types HPV 31, -33, -45, -52 and -58, these types account for greater than 90% of cervical cancer (Schiffman et al., J. Natl. Cancer Inst. 85(12): 958-64 (1993)). Cervical cancer is the second most prevalent cause of cancer deaths in women worldwide.

Papillomaviruses are small (50-60 nm), nonenveloped, icosahedral DNA viruses that encode up to eight early (E1-E7) and two late (L1-L2) genes. The L1 protein is the major capsid protein and has a molecular weight of 55-60 kDa. Expression of the L1 protein or a combination of the L1 and L2 proteins in yeast, insect cells, mammalian cells or bacteria leads to self-assembly of virus-like particles (VLPs) (for review, see Schiller and Roden, in Papillomavirus Reviews: Current Research on Papillomaviruses; Lacey, ed. Leeds, UK: Leeds Medical Information, pp 101-12 (1996)). VLPs are morphologically similar to authentic virions and are capable of inducing high titres of neutralizing antibodies upon administration into animals or humans. Because VLPs do not contain the potentially oncogenic viral genome, they present a safe alternative to the use of live virus in HPV vaccine development (for review, see Schiller and Hidesheim, J. Clin. Virol. 19: 67-74 (2000)). For this reason, the L1 and L2 genes have been identified as immunological targets for the development of prophylactic and therapeutic vaccines for HPV infection and disease.

VLP-based vaccines have proven to be effective at inducing immune responses in human patients vaccinated with bivalent HPV 16 and 18 (Harper et al. Lancet 364(9447): 1757-65 (2004)) and quadrivalent HPV 6, 11, 16, and 18 VLP-based vaccines (Villa et al. Vaccine 24: 5571-5583 (2006)). However, it is a common goal of vaccine development to augment the immune response to the desired antigen to induce long lasting protective immunity.

Co-administration of vaccines with compounds that can enhance the immune response against the antigen of interest, known as adjuvants, has been extensively studied. In addition to increasing the immune response against the antigen of interest, some adjuvants may be used to decrease the amount of antigen necessary to provoke the desired immune response or decrease the number of injections needed in a clinical regimen to induce a durable immune response and provide protection from disease.

Aluminum-based compounds were determined to possess adjuvant activity over 60 years ago (for review, see Lindblad, E. B. Immunol. and Cell Biol. 82: 497-505 (2004); Baylor et al. Vaccine 20: S18-S23 (2002)). Aluminum adjuvants are generally regarded as safe when used at appropriate dosages. Many have been approved for administration into humans by regulatory agencies worldwide.

While the mechanism of action of aluminum adjuvants is not completely understood, it is generally thought that for optimal immunostimulating effect, the targeted antigen should be adsorbed onto the aluminum in a vaccine preparation (see Lindblad, supra). When formulated in this manner, aluminum adjuvants are able to induce potent antibody (TH2) responses against many antigens; but rarely stimulate cellular (TH1) immune responses. With regards to HPV, it has been shown that an HPV 6, 11, 16 and 18 L1 VLP-based vaccine in which the VLPs were adsorbed to an aluminum adjuvant produced a significantly stronger immune response in rhesus macaques than the response resulting from a corresponding L1 VLP vaccine lacking aluminum (Ruiz et al., Journal of Immune Based Therapies and Vaccines 3(1): 2 (2005)). It is important to note that while significantly higher antibody titers resulted from the aluminum-adjuvanted vaccine relative to VLPs alone, the immune response was not qualitatively different as both adjuvanted and non-adjuvanted vaccines produced similar isotype profiles.

In order to develop prophylactic HPV vaccines with long-term efficacy, it would be advantageous to achieve higher magnitude immune responses comprising strong humoral as well as cellular immune responses. It would also be beneficial to develop a VLP-based vaccine that produces an immune response to HPV L1 this is sufficiently enhanced to allow a reduced number of vaccine injections relative to current prophylactic clinical schedules.

SUMMARY OF THE INVENTION

The present invention provides pharmaceutical compositions and formulations that can induce an immune response against HPV in a patient and can prevent infection of HPV in the patient, which is the most effective method of eliminating the morbidity and mortality associated with HPV. The present invention also provides methods of using the compositions and formulations provided herein.

In one aspect, the present invention is related to pharmaceutical compositions comprising VLPs of at least one type of HPV, an aluminum adjuvant, an ISCOM-type adjuvant, and a pharmaceutically acceptable carrier, such as an excipient, diluent, stabilizer, buffer, or alternative substance that is designed to facilitate administration of the composition in the desired amount to the patient; wherein said VLPs are comprised of recombinant L1 protein or recombinant L1+L2 proteins of HPV and wherein said VLPs are adsorbed to said aluminum adjuvant. The compositions provided herein may also contain additional physiologically acceptable components, such as buffer, normal saline or phosphate buffered saline, sucrose, other salts and/or polysorbate.

The present invention further provides HPV vaccine formulations comprising: (a) from about 10 μg to about 100 μg of HPV VLPs of at least one HPV type, wherein the HPV type is selected from the group consisting of: HPV6, HPV11, HPV16, HPV18, HPV26, HPV31, HPV33, HPV35, HPV39, HPV45, HPV51, HPV52, HPV53, HPV55, HPV56, HPV58, HPV59, HPV66, HPV68, HPV73, and HPV82; said HPV VLPs comprised of recombinant L1 or recombinant L1+L2 protein of HPV; (b) from about 150 μg to about 600 μg of aluminum adjuvant; and (c) from about 10 μg to about 200 μg of an ISCOM-type adjuvant, said ISCOM-type adjuvant comprising a saponin, cholesterol, and a phospholipid; wherein said HPV VLPs are adsorbed onto said aluminum adjuvant.

In a specific embodiment of this aspect of the invention, the HPV vaccine formulation comprises (a) from about 20 μg to about 60 μg of VLPs of at least one HPV type; (b) from about 200 μg to about 300 μg of the aluminum adjuvant; and (c) from about 15 μg to about 120 μg of the ISCOM-type adjuvant.

In still other specific embodiments, the invention provides an HPV vaccine formulation comprising: (a) from about 20 μg to about 60 μg of VLPs of each of HPV types 6, 11, 16, 18, 31, 45, 52, and 58, said HPV VLPs comprised of recombinant L1 or recombinant L1+L2 protein of HPV; (b) from about 200 μg to about 300 μg of aluminum adjuvant; and (c) from about 30 μg to about 120 μg of an ISCOM-type adjuvant, said ISCOM-type adjuvant comprising a saponin, cholesterol, and a phospholipid; wherein said HPV VLPs are adsorbed onto said aluminum adjuvant.

In a further aspect of the invention, there are provided pharmaceutical compositions comprising HPV VLPs, an antimicrobial preservative selected from the group consisting of: m-cresol, phenol, and benzyl alcohol, and a pharmaceutically acceptable carrier. The antimicrobial preservative-containing HPV vaccine compositions may optionally comprise an aluminum adjuvant and an ISCOM-type adjuvant, as described, supra; however, HPV VLP compositions comprising an antimicrobial preservative without an adjuvant are also contemplated.

Also provided by the present invention is a method of inducing an immune response to HPV in a human patient comprising administering to the patient a pharmaceutical composition comprising HPV VLPs, an aluminum adjuvant, and an ISCOM-type adjuvant, said ISCOM-type adjuvant comprising a saponin, cholesterol, and a phospholipid; wherein said HPV VLPs are comprised of recombinant L1 protein or recombinant L1+L2 protein of HPV and wherein said VLPs are adsorbed to the aluminum adjuvant.

The present invention further relates to a method of preventing infection of a human patient by an HPV comprising administration of a pharmaceutical composition comprising recombinant HPV VLPs, aluminum adjuvant, and an ISCOM-type adjuvant to the patient, wherein said ISCOM-type adjuvant, wherein the HPV VLPs are comprised of recombinant L1 protein or recombinant L1+L2 protein of HPV and wherein said VLPs are adsorbed to the aluminum adjuvant.

As used throughout the specification and in the appended claims, the singular forms “a,” “an,” and “the” include the plural reference unless the context clearly dictates otherwise.

As used throughout the specification and appended claims, the following definitions and abbreviations apply:

The terms “HPV” and “PV” refer to human papillomavirus and papillomavirus, respectively.

The term “effective amount” means sufficient VLP vaccine composition is introduced to a patient to produce a desired effect such as inducing an immune response against HPV in the patient or preventing HPV infection. One skilled in the art recognizes that this level may vary.

The term “patient” refers to any human being that is to receive the HPV vaccines, or pharmaceutical compositions, described herein. As defined herein, a “patient” includes those already infected with HPV as well as those in which HPV infection is to be prevented.

A “disorder” is any condition that would benefit from treatment with the compositions of the present invention. Encompassed by the term “disorder” are any disorder or pathology that is associated with infection by HPV. The compositions of the present invention are intended for use as treatments or for prophylaxis of disorders or conditions characterized by HPV infection, including, but not limited to, benign warts, nonmalignant condyloma acuminata and/or low-grade dysplasia of the genital or respiratory mucosa, and in situ and invasive carcinomas of the cervix, vagina, vulva and anal canal.

“Formulation” refers to a single dose of vaccine, which can be included in any volume suitable for injection. In specific embodiments, a formulation is made in a 0.5 mL total volume. Unless otherwise stated, use of the term “formulation” applies to a single dose of vaccine, which can be delivered to a single patient in need thereof. The term “multi-dose” refers to an HPV formulation which contains more than one dose of vaccine, which can be administered to more than one patient.

“VLP” or “VLPs” mean(s) virus-like particle or virus-like particles.

“MAA” means Merck aluminum adjuvant. MAA is an amorphous aluminum hydroxyphosphate sulfate adjuvant. The term “MAA” is used interchangeably herein with the term “AAHS.”

“cLIA” refers to a competitive Luminex (Luminex Corp., Austin Tex.) immunoassay, an example of which is described in U.S. Pat. No. 7,067,258 and in Opalka et al. Clin Diagn Lab Immunol. 10(1):108-15 (2003).

“GMT” refers to a geometric mean titer.

An “ISCOM-type adjuvant” is an adjuvant comprising an immune stimulating complex (ISCOM), which is comprised of a saponin, cholesterol, and a phospholipid, which together form a characteristic caged-like particle, having a unique spherical, caged-like structure that contributes to its function (for review, see Barr and Mitchell, Immunology and Cell Biology 74: 8-25 (1996)). This term includes both ISCOM adjuvants, which are produced with an antigen and comprise antigen within the ISCOM particle and ISCOM matrix adjuvants, which hollow ISCOM-type adjuvants that are produced without antigen. In preferred embodiments of the compositions and methods provided herein, the ISCOM-type adjuvant is an ISCOM matrix particle adjuvant, such as ISCOMATRIX®, which is manufactured without antigen (ISCOM® and ISCOMATRIX® are the registered trademarks of CSL Limited, Parkville, Australia).

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 shows the anti-HPV 16 geometric mean titers (GMT) by vaccination group among rhesus macaques immunized with an experimental octavalent HPV VLP vaccine over time. The vaccines were adjuvanted either with MAA or MAA+IMX, according to the indicated immunization schedule and as described in EXAMPLE 1.

FIG. 2 shows the anti-HPV 31 geometric mean titers (GMT) by vaccination group among rhesus macaques immunized with an experimental octavalent HPV VLP vaccine over time. The vaccines were adjuvanted either with MAA or MAA+IMX, according to the indicated immunization schedule and as described in EXAMPLE 1.

FIG. 3 shows a summary of anti-HPV 6, 11, 16 or 18 cLIA geometric mean titers (GMT) by vaccination group among human subjects who were seronegative to the relevant HPV type(s) at day 1 (Phase A results). A brief description of the clinical protocol is set forth in EXAMPLE 3.

FIG. 4 shows a summary of anti-HPV 6, 11, 16 or 18 cLIA geometric mean titers (GMT) by vaccination group among human subjects who were seronegative to the relevant HPV type(s) at day 1 (Phase B results). A brief description of the clinical protocol is set forth in EXAMPLE 3.

FIG. 5 shows the percent of intact monomer of octavalent HPV VLP vaccine samples stored at 37° C. over time. Shown are results from SDS-PAGE analysis of octavalent vaccine formulations ±ISCOMATRIX and ±MAA adjuvant (see EXAMPLES 4 and 5). Data are provided at Time=0 (dotted bars), 1 month (striped bars), 3 months (solid bars) and 6 months (hatched bars).

FIG. 6 shows the in vitro antigenicity of octavalent HPV solution and MAA samples with and without IMX determined by IVRP analysis (units/mL) (see EXAMPLES 4 and 6).

FIG. 7 shows the impact of preservatives on the stability of octavalent HPV vaccine formulations in the absence of IMX (see EXAMPLE 12).

FIG. 8 shows the impact of preservatives on the stability of octavalent HPV vaccine formulations in the presence of IMX (see EXAMPLE 12).

FIG. 9, panel A, shows preservative stability in HPV vaccine formulations in the absence of IMX. Panel B shows preservative stability in HPV vaccine formulations comprising IMX (see EXAMPLE 13).

DETAILED DESCRIPTION OF THE INVENTION

In accordance with this invention, it has been shown that HPV vaccine formulations comprising HPV VLPs of at least one HPV type, an ISCOM-type adjuvant and an aluminum adjuvant are able to provoke higher Ab titers to the targeted HPV types in animal models and in human patients when compared to VLP vaccines comprising aluminum adjuvant alone. To this end, HPV VLP vaccine formulations and pharmaceutical compositions are provided herein that comprise HPV VLPs which are adsorbed onto aluminum adjuvant in combination with an ISCOM-type adjuvant, as described in detail below.

In accordance with another aspect of the invention described herein, it has been shown that the addition of an antimicrobial preservative selected from the group consisting of: m-cresol, phenol, and benzyl alcohol, to pharmaceutical compositions and formulations comprising HPV VLPs is effective at reducing or eliminating microbes and does not negatively impact the structural and thermal stability of the VLPs at 2-8° C. Thus, the invention also relates to HPV vaccine formulations and pharmaceutical compositions comprising HPV VLPs and an antimicrobial preservative selected from the group consisting of: m-cresol, phenol and benzyl alcohol. The vaccine compositions according to this aspect of the invention may also include and ISCOM-type adjuvant and an aluminum adjuvant, as described above.

Virus-like particle-based vaccines have proven to be safe and effective at inducing immune responses against many types of HPV in human patients. VLPs can self-assemble when L1, the major capsid protein of human and animal papillomaviruses, is expressed in yeast, insect cells, mammalian cells or bacteria (for review, see Schiller and Roden, in Papillomavirus Reviews: Current Research on Papillomaviruses; Lacey, ed. Leeds, UK: Leeds Medical Information, pp 101-12 (1996)). Morphologically indistinct HPV VLPs can also be produced by expressing a combination of the L1 and L2 capsid proteins. VLPs are composed of 72 pentamers of L1 in a T=7 icosahedral structure (Baker et al., Biophys. J. 60(6): 1445-56 (1991)).

VLPs are morphologically similar to authentic virions and are capable of inducing high titres of neutralizing antibodies upon administration into an animal. Immunization of rabbits (Breitburd et al., J. Virol. 69(6): 3959-63 (1995)) and dogs (Suzich et al., Proc. Natl. Acad. Sci. USA 92(25): 11553-57 (1995)) with VLPs was shown to both induce neutralizing antibodies and protect against experimental papillomavirus infection. Additionally, immunization of adult women with HPV 16 VLPs was shown to protect against HPV 16 infection and HPV 16 cervical intraepithelial neoplasia (Koutsky et al. N. Engl. J. Med. 347: 1645-51 (2002)). Because VLPs do not contain the potentially oncogenic viral genome and can self-assemble when expressed from a single gene, they present a safe alternative to the use of live virus in HPV vaccine development (for review, see Schiller and Hidesheim, J. Clin. Virol. 19: 67-74 (2000)).

As stated above, VLP-based vaccines have proven to be effective at inducing immune responses in many animal models and in human patients. However, a goal of vaccine development is often to induce higher antibody titers, leading to long lasting protective immunity. To this end, pharmaceutical compositions and vaccines comprising HPV VLPs of at least one HPV type, an ISCOM-type adjuvant and an aluminum adjuvant have been developed, as disclosed herein. Said pharmaceutical compositions and vaccines are able to provoke higher IgG Ab titers to the targeted HPV types than VLP vaccines comprising aluminum adjuvant alone. This combination can lead to the induction of long-lasting effective immunoprophylaxis against HPV infection, reduced antigen dosage, and immunization schedules comprising a decreased number of injections over time.

Thus, the present invention relates to pharmaceutical compositions and formulations comprising HPV virus-like particles, an aluminum adjuvant, an ISCOM-type adjuvant, and a pharmaceutically acceptable carrier, wherein said VLPs are comprised of recombinant L1 protein or recombinant L1+L2 proteins of HPV and wherein said VLPs are adsorbed to said aluminum adjuvant.

Any HPV VLP-based vaccine is suitable for use in the pharmaceutical compositions and methods of the present invention. Known HPV VLP vaccines can be modified to include both an aluminum adjuvant and an ISCOM-type adjuvant. Additionally, new vaccines can be developed according to the invention described herein that comprise at least one HPV type in the form of an HPV VLP adsorbed to an aluminum adjuvant in combination with an ISCOM-type adjuvant.

An exemplary HPV VLP vaccine is the Quadrivalent Human Papillomavirus (Types 6, 11, 16, 18) Recombinant Vaccine, which is referred to herein by its proprietary name GARDASIL® (see Bryan, J. T. Vaccine 25(16): 3001-6 (2007); Shi et al. Clinical Pharmacology and Therapeutics 81(2): 259-64 (2007)). GARDASIL® is a non-infectious recombinant, quadrivalent vaccine prepared from highly purified VLPs of the major capsid (L1) protein of HPV types 6, 11, 16, and 18. The L1 proteins are produced by separate fermentations in recombinant Saccharomyces cerevisiae and self-assembled into VLPs. In addition to VLPs, each GARDASIL® vaccine dose contains aluminum adjuvant (as amorphous aluminum hydroxyphosphate sulfate), sodium chloride, L-histidine, polysorbate 80, sodium borate, and water. Therefore, the present invention includes the combination of GARDASIL® with an ISCOM-type adjuvant, such as ISCOMATRIX® (CSL Ltd., Parkville, Australia).

In alternative embodiments of the invention, the pharmaceutical compositions and formulations comprise HPV VLP-based vaccines which are monovalent, bivalent, or trivalent. For example, pharmaceutical compositions comprising VLPs of HPV 16 and/or HPV 18, without the inclusion of other HPV VLP types, are included within the scope of the invention. Quadrivalent vaccines comprising different HPV VLPs than the HPV types included in GARDASIL® are also contemplated herein. For example, pharmaceutical compositions comprising VLPs of HPV types 31, 45, 52, and 58 are within the scope of this invention.

In additional embodiments, the pharmaceutical compositions comprise VLP-based vaccines with more than four different types of VLPs. In one preferred embodiment, the pharmaceutical composition comprises eight different HPV VLP types. A particularly preferred octavalent vaccine is described in EXAMPLES 1 and 2 and comprises HPV types 6, 11, 16, 18, 31, 45, 52, and 58. An alternative octavalent composition of the present invention comprises HPV types 6, 11, 16, 18, 31, 35, 45, and 58. Other octavalent HPV VLP vaccines are also contemplated herein; for example, HPV 33 may be substituted for HPV 31. Additional HPV VLPs may also be added to the vaccine formulations described herein, leading to HPV vaccines that are 9-valent, 10-valent, and so forth.

As stated above, the pharmaceutical compositions and formulations of the present invention comprise at least one HPV VLP type, such as HPV 16 or 18. In preferred embodiments of the compositions disclosed herein, the vaccine further comprises VLPs of at least one additional HPV type. In particularly preferred embodiments, the at least one additional HPV type is selected from the group consisting of: HPV6, HPV 11, HPV16, HPV18, HPV26, HPV31, HPV33, HPV35, HPV39, HPV45, HPV51, HPV52, HPV53, HPV55, HPV56, HPV58, HPV59, HPV66, HPV68, HPV73, and HPV82.

The pharmaceutical compositions of the present invention comprise HPV VLPs comprised of recombinant L1 or recombinant L1+L2 proteins of HPV. HPV L1 or L1+L2 protein can be expressed recombinantly by molecular cloning of L1 or L1+L2 DNA into an expression vector containing a suitable promoter and other appropriate transcription regulatory elements, and transferred into prokaryotic or eukaryotic host cells to produce recombinant protein. Techniques for such manipulations are fully described by Sambrook et al. (Molecular Cloning: A Laboratory Manual; Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y., (1989)), which is hereby incorporated by reference. VLPs can self-assemble when L1 protein is recombinantly expressed in a host cell.

The recombinant HPV L1 proteins of the present invention may be any full-length L1 protein sequence that can be found in nature or any mutated or truncated L1 protein that is capable of self-assembling into VLPs. L1 protein sequences for use in the present invention can be determined by isolating DNA from one or more clinical samples containing an HPV type of choice, determining the sequence of the HPV L1 DNA sequence, and translating the DNA sequence into an amino acid sequence using the genetic code. Many exemplary L1 sequences suitable for use in the present invention can be found in the literature. See, e.g., U.S. Pat. Nos. 5,820,870; 7,250,170; 7,276,243; and 5,437,951; Kirii et al. (Virology 185(1): 424-427 (1991)). Further L1 proteins that are useful in the compositions and formulations of the present invention include biologically active fragments and/or mutants of an HPV L1 sequence, including but not necessarily limited to amino acid substitutions, deletions, additions, amino terminal truncations and carboxy-terminal truncations, such that these mutations provide for L1 proteins or protein fragments that are capable of forming a VLP. See, e.g., International Publication WO 2006/114312 and U.S. Pat. No. 6,599,508.

Appropriate host cells for the expression of recombinant HPV L1 or recombinant L1+L2 and subsequent self-assembly of VLPs include, but are not limited to yeast cells, insect cells, mammalian cells or bacteria. In exemplary embodiments of the invention, the VLPs are produced in yeast cells such as a yeast selected from the group consisting of: Saccharomyces cerevisiae, Hansenula polymorphs, Pichia pastoris, Kluyvermyces fragilis, Kluveromyces lactis, and Schizosaccharomyces pombe. Expression of HPV VLPs in yeast cells offers the advantages of being cost-effective and easily adapted to large-scale growth in fermenters.

The present invention also includes pharmaceutical compositions comprising mutant forms of HPV VLPs, such as HPV VLPs that comprise biologically active fragments and/or mutants of an HPV L1 or L2 protein, including but not necessarily limited to amino acid substitutions, deletions, additions, amino terminal truncations and carboxy-terminal truncations such that these mutations provide for proteins or protein fragments of therapeutic or prophylactic use and would be useful for HPV VLP vaccine development. Any such mutant form of an HPV L1 protein should be capable of forming VLPs and of provoking an immune response against the desired HPV type when administered to a human.

Additionally, one of skill in the art will recognize that the L1 or L1+L2 protein, which is used to self-assemble VLPs for inclusion in the compositions disclosed herein, may be encoded by a full-length wild-type HPV L1 or L2 polynucleotide, or may be encoded by a fragment or mutant of the known wild-type sequence. Wild-type polynucleotide sequences that encode mRNA expressing HPV L1 or L2 protein are available in the art. Any mutant polynucleotide will encode either a protein or protein fragment which at least substantially mimics the pharmacological properties of an HPV L1 or L2 protein, including the ability to form VLPs that are able to provoke an immune response against the HPV type of interest when administered to a human. Any such polynucleotide includes but is not necessarily limited to: nucleotide substitutions, deletions, additions, amino-terminal truncations and carboxy-terminal truncations.

The amount of virus-like particles of each HPV type to be included in the formulations and compositions of the present invention will depend on the immunogenicity of the expressed gene product. In general, an immunologically or prophylactically effective dose comprises about 10 μg to about 100 μg, and preferably about 20 μg to 80 μg of VLPs.

Aluminum has long been shown to stimulate the immune response against co-administered antigens, primarily by stimulating a TH2 response. In addition to HPV VLPs and an ISCOM-type adjuvant, the formulations of this aspect of the present invention are adsorbed to aluminum adjuvant. It is preferred that the aluminum adjuvant of the compositions provided herein is not in the form of an aluminum precipitate. Aluminum-precipitated vaccines may increase the immune response to a target antigen, but have been shown to be highly heterogeneous preparations and have had inconsistent results (see Lindblad E. B. Immunology and Cell Biology 82: 497-505 (2004)). Aluminum-adsorbed vaccines, in contrast, can be preformed in a standardized manner, which is an essential characteristic of vaccine preparations for administration into humans. Moreover, it is thought that physical adsorption of a desired antigen onto the aluminum adjuvant has an important role in adjuvant function, perhaps in part by allowing a slower clearing from the injection site or by allowing a more efficient uptake of antigen by antigen presenting cells.

The aluminum adjuvant of the present invention may be in the form of aluminum hydroxide (Al(OH)3), aluminum phosphate (AlPO4), aluminum hydroxyphosphate, amorphous aluminum hydroxyphosphate sulfate (AAHS) or so-called “alum” (KAl(SO4).12H2O) (see Klein et al., Analysis of aluminum hydroxyphosphate vaccine adjuvants by (27)Al MAS NMR., J. Pharm. Sci. 89(3): 311-21 (2000)). In exemplary embodiments of the invention provided herein, the aluminum adjuvant is aluminum hydroxyphosphate or AAHS. The ratio of phosphate to aluminum in the aluminum adjuvant can range from 0 to 1.3. In preferred embodiments of this aspect of the invention, the phosphate to aluminum ratio is within the range of 0.1 to 0.70. In particularly preferred embodiments, the phosphate to aluminum ratio is within the range of 0.2 to 0.50.

In some embodiments of the invention, the aluminum adjuvant is in the form of AAHS (referred to interchangeably herein as Merck aluminum adjuvant (MAA)). MAA carries zero charge at neutral pH, while AlOH carries a net positive charge and AlPO4 typically carries a net negative charge at neutral pH. MAA has a higher capacity to bind HPV VLPs than AlOH. In addition, VLPs adsorbed to MAA can induce a greater humoral immune response in mice than VLPs adsorbed to AlOH. Caulfield et al., Human Vaccines 3: 139-146 (2007). While not wishing to be bound by theory, it is possible that net charge of the aluminum adjuvant can affect its ability to bind the VLP antigen, with strongly charged adjuvants unable to bind antigen as strongly as neutral charged adjuvants. For this reason, it is preferred that the aluminum adjuvant of the pharmaceutical compositions of the present invention have zero point surface charge at neutral pH. One of skill in the art will be able to vary the buffer, salt concentration and/or percent of free phosphate in order to allow a zero point surface charge at neutral pH.

One of skill in the art will be able to determine an optimal dosage of aluminum adjuvant that is both safe and effective at increasing the immune response to the targeted HPV type(s). For a discussion of the safety profile of aluminum, as well as amounts of aluminum included in FDA-licensed vaccines, see Baylor et al., Vaccine 20: S18-S23 (2002). Generally, an effective and safe dose of aluminum adjuvant varies from 150 to 600 μg/dose (300 to 1200 μg/mL concentration). In specific embodiments of the formulations and compositions of the present invention, there is between 200 and 300 μg aluminum adjuvant per dose of vaccine. In alternative embodiments of the formulations and compositions of the present invention, there is between 300 and 500 μg aluminum adjuvant per dose of vaccine.

As stated above, one aspect of the present invention provides vaccines and formulations which comprise HPV VLPs in combination with an aluminum adjuvant and an ISCOM-type adjuvant. In the formulations and methods provided herein, the ISCOM-type adjuvant comprises a saponin, cholesterol, and a phospholipid, and forms an immune-stimulating complex or ISCOM. The potent adjuvant activity of saponins, which are typically isolated from the bark of the Quillaia saponaria tree, was first documented over 80 years ago (for review, see Barr and Mitchell, Immunology and Cell Biology 74: 8-25 (1996); and Skene and Sutton, Methods 40: 53-59 (2006)). Compared to aluminum adjuvants, ISCOM-type adjuvants or ISCOMs are able to provoke a broader immune response to a co-administered antigen, comprising both T-cell and antibody responses. However, a potential for toxicity and haemolytic activity was found, limiting the promise of saponins for human or animal use at that time.

Since then, it was discovered that saponins, when combined with cholesterol and phospholipid, form a characteristic particle having a caged-like structure comprised of twenty or more subunits. This unique structure contributes to the adjuvant activity of the ISCOMs. Additionally, the incorporation of saponins into ISCOMs, together with cholesterol and phospholipid, was shown to eliminate the haemolytic activity of saponins. It was also shown that less adjuvant was needed to induce an immune response when ISCOMs were utilized as adjuvant compared to free saponins (see Skene and Sutton, supra). For these reasons, ISCOMs have been intensely studied as potential vaccine adjuvants.

In accordance with the present invention, it has been found that the combination of an aluminum adjuvant and an ISCOM-type adjuvant in a VLP-based vaccine can provoke stronger antibody titers than the same vaccine formulated with aluminum adjuvant alone. Additionally, it was found that HPV VLP vaccine formulations comprising both aluminum and IMX are more stable than VLP vaccines formulated without aluminum adjuvant, either in the presence or absence of ISCOMATRIX®.

To this end, the present invention relates to pharmaceutical compositions comprising VLPs of at least one type of HPV, an aluminum adjuvant, an ISCOM-type adjuvant, and a pharmaceutically acceptable carrier, said ISCOM-type adjuvant comprising a saponin, cholesterol, and a phospholipid, wherein said VLPs are comprised of recombinant L1 protein or recombinant L1+L2 proteins of HPV and wherein said VLPs are adsorbed to said aluminum adjuvant.

In specific embodiments of this aspect of the invention the VLPs of at least one type of HPV include an HPV type selected from the group consisting of: HPV6, HPV 11, HPV16, HPV18, HPV26, HPV31, HPV33, HPV35, HPV39, HPV45, HPV51, HPV52, HPV53, HPV55, HPV56, HPV58, HPV59, HPV66, HPV68, HPV73, and HPV82. However, any HPV type that is associated with a pathological condition or disorder is suitable for inclusion in the pharmaceutical compositions provided herein. In some embodiments of the invention, the pharmaceutical compositions include VLPs of HPV types 6, 11, 16, and 18. In alternative embodiments, the compositions comprise VLPs of HPV types 6, 11, 16, 18, 31, 45, 52, and 58. In further embodiments, the compositions comprise VLPs of HPV types 6, 11, 16, 18, 31, 35, 45, and 58. In still further embodiments, the compositions of the invention, including the quadrivalent and octavalent compositions described, supra, further comprise VLPs of at least one additional HPV type, wherein the at least one additional HPV type is selected from the group consisting of: HPV26, HPV33, HPV35, HPV39, HPV51, HPV53, HPV55, HPV56, HPV59, HPV66, HPV68, HPV73, and HPV82.

The pharmaceutical compositions of this aspect of the present invention comprise an aluminum adjuvant, which effectively enhances the humoral immune response to an HPV type of interest, when VLPs are adsorbed to the aluminum adjuvant and administered to a patient. In specific embodiments of the invention, the aluminum adjuvant is aluminum hydroxyphosphate (AH) or amorphous aluminum hydroxyphosphate sulfate (AAHS). It is preferred that, in these specific embodiments, the aluminum adjuvant comprises phosphate and aluminum present in a molar ratio of about 0.1 to about 1.1 phosphate (PO4) to aluminum (Al). It is more preferred that the aluminum adjuvant comprises phosphate and aluminum present in a molar ratio of about 0.2 to about 0.5 PO4/Al. In alternative embodiments of this aspect of the invention, the aluminum adjuvant is aluminum hydroxide.

The ISCOM-type adjuvant of the compositions provided herein may be prepared by any one of several known methods for producing ISCOMs known in the art (for review, see Barr and Mitchell, Immunology and Cell Biology 74: 8-25 (1996)). Well-known methods of production include a centrifugation method and a dialysis method, as described in Barr, supra. ISCOM adjuvants may also be obtained from a commercial source. ISCOM-type vaccines are formulated with Quillaja saponins, cholesterol, and phospholipids such as phosphphatidylcholine, although it has been found that almost any phospholipid is useful in the formation of an ISCOM particle (see Barr and Mitchell, supra).

In preferred embodiments of the present invention, the ISCOM-type adjuvant is a so-called ISCOM-matrix adjuvant, such as ISCOMATRIX® (CSL Ltd., Parkville, Australia), which comprises the ISCOPREP® saponin (CSL Ltd., Parkville, Australia) cholesterol, and dipalmitoylphosphatidylcholine.

The compositions of the present invention optimally comprise between 10 and 200 μg of ISCOM-matrix adjuvant per 0.5 mL dose of VLP vaccine (20-400 μg/mL). In exemplary embodiments of this aspect of the invention, the ISCOM-type adjuvant is ISCOMATRIX®.

The present invention also relates to HPV vaccine formulations comprising: A human papillomavirus (HPV) vaccine formulation comprising: (a) HPV virus-like particles (VLPs) of at least one HPV type, wherein the HPV type is selected from the group consisting of: HPV6, HPV11, HPV16, HPV18, HPV26, HPV31, HPV33, HPV35, HPV39, HPV45, HPV51, HPV52, HPV53, HPV55, HPV56, HPV58, HPV59, HPV66, HPV68, HPV73, and HPV82; said HPV VLPs comprised of recombinant L1 or recombinant L1+L2 protein of HPV; wherein the VLPs of any one HPV type are present in a concentration of about 10 μg to about 100 μg and wherein the total VLP concentration is between 10 μg and 600 μg; (b) from about 150 μg to about 600 μg of aluminum adjuvant; and (c) from about 10 μg to about 200 μg of an ISCOM-type adjuvant; wherein said HPV VLPs are adsorbed onto said aluminum adjuvant In specific embodiments of this aspect of the invention, the HPV vaccine formulations comprise (a) from about 20 μg to about 80 μg of VLPs of at least one HPV type; (b) from about 200 μg to about 300 μg of the aluminum adjuvant; and (c) from about 15 μg to about 120 μg of the ISCOM-type adjuvant. In other embodiment, the formulation further comprises from about 20 μg to about 60 μg of VLPs of at least one additional HPV type.

The instant invention relates, in one embodiment, to HPV vaccine formulations comprising VLPs of HPV types 6, 11, 16, and 18. The present invention also provides HPV vaccine formulations, further comprising VLPs of HPV types 31, 45, 52, and 58. The present invention further provides HPV vaccine formulations, as described above, further comprising HPV types 31, 35, 45, and 58.

In certain aspects of the invention provided herein, there is provided HPV vaccine formulations comprising an ISCOM-type adjuvant, wherein the ISCOM-type adjuvant is ISCOMATRIX®.

Also provided herein is an HPV vaccine formulation comprising: (a) from about 20 μg to about 40 μg of VLPs of each of HPV types 6, 11, 16, 18, 31, 45, 52, and 58, said HPV VLPs comprised of recombinant L1 or recombinant L1+L2 protein of HPV; (b) from about 200 μg to about 300 μg of aluminum adjuvant; and (c) from about 30 μg to about 120 μg of an ISCOM-type adjuvant, said ISCOM-type adjuvant comprising a saponin, cholesterol, and a phospholipid; wherein said HPV VLPs are adsorbed onto said aluminum adjuvant.

The HPV types to be used in the vaccine formulation above may be substituted with other HPV types, or combination thereof, such as an octavalent vaccine formulation comprising HPV types 6, 11, 16, 18, 31, 35, 45, and 58.

The pharmaceutical compositions and formulations of the current invention may be used to induce a durable and efficacious immune response to HPV in a patient, and to prevent HPV infection. To that end, the present invention provides a method of inducing an immune response to HPV in a human patient comprising administering to the patient a pharmaceutical composition comprising HPV VLPs, an aluminum adjuvant, and an ISCOM-type adjuvant, said ISCOM-type adjuvant comprising a saponin, cholesterol, and a phospholipid; wherein said HPV VLPs are comprised of recombinant L1 protein or recombinant L1+L2 protein of HPV and wherein said VLPs are adsorbed to the aluminum adjuvant.

The present invention also provides a method of preventing infection of a human patient by a HPV comprising administration of a pharmaceutical composition comprising recombinant HPV VLPs, aluminum adjuvant, and an ISCOM-type adjuvant to the patient, wherein said ISCOM-type adjuvant comprises a saponin, a sterol, and a phospholipid, wherein the HPV VLPs are comprised of recombinant L1 protein or recombinant L1+L2 protein of HPV and wherein said VLPs are adsorbed to the aluminum adjuvant.

In specific embodiments of the methods provided herein, the pharmaceutical composition that is administered to the patient comprises VLPs of HPV types 6, 11, 16, and 18. In additional embodiments, the compositions further comprise VLPs of HPV types 31, 45, 52, and 58. In further embodiments, the compositions further comprise VLPs of HPV types 31, 35, 45, and 58. In other embodiments, the compositions further comprise VLPs of at least one additional HPV type selected from the group consisting of: HPV26, HPV33, HPV35, HPV39, HPV51, HPV53, HPV55, HPV56, HPV59, HPV66, HPV68, HPV73, and HPV82.

Vaccine compositions of the present invention may be used alone at appropriate dosages which allow for optimal inhibition of HPV infection with minimal potential toxicity. In addition, co-administration or sequential administration of other agents may be desirable.

The formulations and compositions of the present invention may be administered to a patient by intramuscular injection, subcutaneous injection, intradermal introduction, or impression though the skin. Other modes of administration such as intraperitoneal, intravenous, or inhalation delivery are also contemplated. In preferred embodiments of the invention, the vaccines and pharmaceutical compositions are administered by intramuscular administration.

In some embodiments of this invention, the HPV pharmaceutical compositions and formulations disclosed herein are administered to a patient in various prime/boost combinations in order to induce an enhanced, durable, immune response. In this case, two pharmaceutical compositions are administered in a “prime and boost” regimen. For example the first composition is administered one or more times, then after a predetermined amount of time, for example, 2 weeks, 1 month, 2 months, six months, or other appropriate interval, a second composition is administered one or more times.

Preferably, the two or more HPV pharmaceutical compositions used in a clinical regimen comprise VLPs of the same HPV type or combination of HPV types. However, it may also be desirable to follow a clinical regimen in which two different HPV pharmaceutical compositions are administered to a patient with an appropriate interval of time separating the two vaccine administrations. For example, a vaccine composition comprising HPV 16 and 18 VLPs may be administered at one point in time, followed by an HPV vaccine composition comprising HPV 31, 45, 52, and 58 VLPs at a second point in time, after a pre-determined length of time has passed. In such cases, each of the two different HPV vaccine compositions may be administered to the patient once, or more than one time, separated by an appropriate length of time.

In accordance with one aspect of the present invention, it was shown that that a two-dose clinical regimen using an HPV VLP vaccine adjuvanted with both AAHS and ISCOMATRIX® can induce an immune response of comparable magnitude as a three-dose regimen using VLP vaccine adjuvanted with AAHS alone (see EXAMPLE 1).

In that respect, the present invention provides a method of preventing HPV infection in a human patient comprising: (a) introducing into the patient a first pharmaceutical composition comprising recombinant HPV VLPs, aluminum adjuvant, and an ISCOM-type adjuvant to the patient, wherein said ISCOM-type adjuvant comprises a saponin, a sterol, and a phospholipid, wherein the HPV VLPs are comprised of recombinant L1 protein or recombinant L1+L2 protein of HPV and wherein said VLPs are adsorbed to the aluminum adjuvant; (b) allowing a predetermined amount of time to pass; and (c) introducing into the patient a second pharmaceutical composition comprising recombinant HPV VLPs, aluminum adjuvant, and an ISCOM-type adjuvant to the patient, wherein said ISCOM-type adjuvant comprises a saponin, a sterol, and a phospholipid, wherein the HPV VLPs are comprised of recombinant L1 protein or recombinant L1+L2 protein of HPV and wherein said VLPs are adsorbed to the aluminum adjuvant.

In specific embodiments of the method described above, the first and second compositions are the same and the clinical regimen includes at least one injection of the composition to “prime” the immune response to HPV and at least one injection to “boost” the immune response. However, other methods in which multiple injections to prime and/or boost the immune response are also contemplated by the invention described herein.

In some circumstances, it may be desirable to provide a multi-dose HPV vaccine formulation which comprises more than one dose of vaccine in the same vial. If a multi-dose formulation is desired, an anti-microbial preservative should be used to kill or prevent the growth of microorganisms, such as bacteria and fungi. Multi-dose vaccine formulations containing anti-microbial preservatives provide several advantages over single dose formulations, including allowing multiple doses of vaccine to be withdrawn from the vial over a period of time without the concern that the first withdrawal inadvertently introduced microbial contamination (Meyer et al., J. Pharm. Sci. 96(12): 3155-3167 (2007)). Many marketed vaccine products, which are unrelated to HPV, comprise phenoxyethanol (DAPTACEL® (Sanofi Pasteur, Lyon, France), PEDIARIX®, INFANRIX®, HAVRIX®, and TWINRIX® (GlaxoSmithKline (GSK), Brentford, Middlesex, United Kingdom) or thimerosal (PEDIARIX® and ENGERIX-B® (GSK)) as anti-microbial preservatives (see Meyer et al., supra). In addition PNEUMOVAX® 23 (Merck & Co., Inc., Whitehouse Station, N.J.) formulations contain phenol as an antimicrobial preservative. However, the compatibility of HPV VLP-containing vaccine formulations with anti-microbial preservatives has not been previously addressed.

Thus, in accordance with one aspect of the present invention, it was shown that the addition of an antimicrobial preservative selected from the group consisting of: m-cresol, phenol, and benzyl alcohol, to vaccine formulations comprising HPV VLPs is effective at reducing or eliminating microbes and does not negatively impact the structural and thermal stability of the VLPs at 2-8° C. It is also shown herein that anti-microbial preservatives selected from the group consisting of: m-cresol, phenol, and benzyl alcohol are an effective preservative in HPV vaccine formulations comprising HPV VLPs in combination with an ISCOM-type adjuvant. Thus, the invention also relates to HPV vaccine formulations comprising HPV VLPs and an antimicrobial preservative selected from the group consisting of m-cresol, phenol and benzyl alcohol. The vaccine formulations according to this aspect of the invention may also include and ISCOM-type adjuvant and an aluminum adjuvant, as described above.

In some preferred embodiments of this aspect of the invention, m-cresol is included in the multi-dose HPV vaccine formulation at a concentration of about 0.15 to about 0.31%. In more preferred embodiments, the multi-dose vaccine formulations comprise m-cresol at a concentration of about 0.25 to about 0.31%. In one preferred embodiment, m-cresol is included in the multi-dose formulation at a concentration of about 0.3%.

In alternative embodiments of the invention, phenol is included in the multi-dose HPV VLP vaccine formulations at a concentration of about 0.25 to about 0.55%. In more preferred embodiments, phenol is included at a concentration of about 0.4 to about 0.55%. In one particularly preferred embodiment, a multi-dose HPV VLP vaccine formulation comprising phenol at a concentration of about 0.5% is provided.

In still further embodiments, the multi-dose HPV vaccine formulations comprise benzyl alcohol at a concentration of about 0.75 to about 1.2%. In more preferred embodiments, benzyl alcohol is included in the multi-dose vaccine formulation at a concentration from about 0.8% to about 1.0%. In a particularly preferred embodiment of this aspect of the invention, the concentration of benzyl alcohol is 0.9%.

Accordingly, one aspect of the present invention relates to a multi-dose HPV vaccine formulation comprising: (a) HPV virus-like particles (VLPs) of at least one HPV type, wherein the HPV type is selected from the group consisting of: HPV6, HPV11, HPV16, HPV18, HPV26, HPV31, HPV33, HPV35, HPV39, HPV45, HPV51, HPV52, HPV53, HPV55, HPV56, HPV58, HPV59, HPV66, HPV68, HPV73, and HPV82; said HPV VLPs comprised of recombinant L1 or recombinant L1+L2 protein of HPV; (b) an aluminum adjuvant; and (c) an anti-microbial preservative selected from the group consisting of: m-cresol, phenol and benzyl alcohol; wherein said HPV VLPs are adsorbed onto said aluminum adjuvant.

The multi-dose HPV vaccine formulation described above may optionally include an ISCOM-type adjuvant.

All publications mentioned herein are incorporated by reference for the purpose of describing and disclosing methodologies and materials that might be used in connection with the present invention. Nothing herein is to be construed as an admission that the invention is not entitled to antedate such disclosure by virtue of prior invention.

Having described preferred embodiments of the invention with reference to the accompanying drawings, it is to be understood that the invention is not limited to those precise embodiments, and that various changes and modifications may be effected therein by one skilled in the art without departing from the scope or spirit of the invention as defined in the appended claims.

The following examples illustrate, but do not limit the invention.

Development of HPV Formulations Comprising Adjuvants: Example 1 Administration of HPV octavalent vaccine with Iscomatrix adjuvant to Rhesus Macaques

To determine if the immune response against HPV VLP-based vaccine could be increased beyond titers achieved with an aluminum adjuvant alone, an octavalent HPV VLP vaccine was administered to rhesus macaques in combination with amorphous aluminum hydroxyphosphate sulfate (AAHS) plus the ISCOMATRIX® adjuvant.

The vaccine consisted of eight different HPV L1 virus-like particles. The VLPs were adsorbed onto aluminum hydroxide phosphate adjuvant (MAA) present at 450 mcg/mL concentration. The MAA-adsorbed vaccines were tested either with or without further addition of ISCOMATRIX® (CSL Limited ABN, Parkville, Australia) present at 200 mcg/mL. The vaccines were in buffer that consisted of 0.32 M NaCl, 10 mM Histidine (pH 6.2) and 0.01% polysorbate-80. A single injection of 0.5-mL volume of the vaccine was given to the right deltoid of each Indian rhesus macaque.

TABLE 1 Concentrations of each VLP type in the vaccine and amounts given to each animal. HPV6 HPV11 HPV16 HPV18 HPV31 HPV45 HPV52 HPV58 mcg/ml 4 8 8 4 4 4 4 4 Dose (0.5 ml) 2 4 4 2 2 2 2 2

The following immunization schedules were tested (n=4 for each group): Group I received immunizations with the MAA-adjuvanted octavalent vaccine at weeks 0 and 8; Group II received immunizations with the MAA/IMX-adjuvanted vaccine at weeks 0 and 8; Group III received immunizations with the MAA/IMX-adjuvanted vaccine at weeks 0, 8, and 24; and Group IV received immunizations with the MAA/IMX-adjuvanted vaccine at weeks 0 and 24. Serum samples were collected from each animal at 4 weeks interval.

Results indicate that all animals that were immunized with either the MAA-adjuvanted or the MAA/IMX-adjuvanted vaccine seroconverted to each of the eight HPV types. When comparing Groups I and II, the geometric mean titers against each of the HPV types were consistently elevated in the MAA/IMX-adjuvanted vaccine recipients (Group H) compared to the MAA-adjuvanted vaccine recipients (Group I). The improvement remained apparent at week 52, suggesting that the effect is long-lived.

When comparing Groups I and IV, results show that after a single dose, the peak titers of the MAA/IMX-adjuvanted vaccine cohort (Group IV) were not only higher than that elicited by a single dose of MAA vaccine (Group I), but also were comparable to the peak titers elicited by two doses of the MAA vaccine (for representative results for HPV 16 and 31, see FIGS. 1 and 2) The titers at week 52 for the 0, 24 dosing regimen with MAA-IMX-adjuvanted vaccine (Group IV) were only slightly lower than those for the 0, 8, 24-dosing regimen with the same vaccine (Group III). This suggests that a two-dosing regimen using the MAA/IMX-adjuvanted vaccine has the potential of inducing comparable levels of immune response as a 3 dosing-regimen with MAA-adjuvanted vaccine.

Example 2 HPV Competitive Luminex Assay

To demonstrate an immune response, sera extract from immunized monkeys were analyzed by competitive Luminex immunoassay (cLIA). The HPV cLIA utilizes eight type-specific, conformational dependent mAbs to monitor the immune response to immunization with an HPV Octavalent vaccine. A more detailed description of the competitive Luminex immunoassay, which utilizes particle-based flow cytometric analysis to simultaneously measure the presence of antibodies to a plurality of HPV types in a test sample, is set forth in U.S. Pat. No. 7,067,258, and in Opalka et al. Clin Diagn Lab Immunol. 10(1):108-15 (2003). An octavalent reference standard solution was prepared for each HPV type in a pre-screened assay matrix containing Antibody Depleted Human Serum (ADHS). The reference standard was a pool of serum samples from Rhesus macaques hyper-immunized with HPV monovalent L1 VLP types 6, 11, 16, 18, 31, 45, 52, 58. All standards, controls and samples were tested in duplicate. Testing of serum samples were performed at a 1:4, 1:40, 1:400, or 1:4000 dilution. Fluorescent units were read and duplicate wells averaged. Dilution corrected mMU/mL serum values were computed based on four parameter logistics fit of the standard curve on each assay plate. Samples that exceeded the limits of quantitation for the standard curve were re-tested at higher dilutions. Duplicates that failed extra variability were not reported and the samples were then retested until they passed the duplicate parameters. Control specifications for the assay were developed and limits of quantitation were established for each HPV type.

Example 3 Immunogenicity of HPV VLP Vaccines in Combination with MAA and Iseomatrix® Adjuvants

The ability of ISCOMATRIX® (IMX) to enhance the immune response to HPV in human patients was evaluated in clinical trials. A two phase, randomized, double-blind, multicenter, IMX dose-escalation controlled study was initiated which tested an octavalent HPV VLP vaccine adjuvanted with amorphous aluminum hydroxyphosphate sulfate (MAA). Subjects were randomized in two separate study phases. IMX concentrations of 15 or 30 meg (Phase A) and 60 or 120 mcg (Phase B) per each 0.5-mL dose were evaluated in the context of an experimental octavalent vaccine containing a fixed concentration of HPV VLPs formulated with MAA (281 mcg) and compared to GARDASIL®. The octavalent vaccine contained HPV VLPs of types 6 (20 mcg), 11 (40 mcg), 16 (40 mcg), 18 (20 mcg), 31 (20 mcg), 45 (20 mcg), 5 (20 mcg), and 58(20 mcg). GARDASIL® is a quadrivalent HPV (Types 6, 11, 16, 18) recombinant vaccine prepared from highly purified L1 VLPs. In addition to VLPs, each vaccine dose contained MAA (225 mcg), sodium chloride, L-histidine, polysorbate 80, sodium borate, and water.

In each arm of the study, vaccine was administered at day 1, month 2, and month 6 as a 0.5-mL intramuscular injection of either one of the four formulations of octavalent HPV L1 VLP with MAA/IMX described above, or GARDASIL®. The study included ˜150 healthy women between the ages of 18 and 24 years at the time of enrollment. Blood samples taken at day 1, month 2, month 3 (1 month post-dose 2), month 6, month 7 (1 month post-dose 3), and month 12 were used for evaluation of immune response to relevant HPV types using a competitive Luminex immunoassay (cLIA), as described in EXAMPLE 2.

An analysis of immune response to the vaccine formulations relative to that of GARDASIL® was conducted in which 145 subjects in Phase A and Phase B (97%) had month 3 (Postdose 2) immunogenicity data available and 73 subjects in Phase A (97%) also had month 7 (Postdose 3) immunogenicity data available. The analysis included subjects in Phase A if they: (i) received all 3 vaccinations in the appropriate day ranges, (ii) had serology samples collected in appropriate day ranges, (iii) were seronegative to the relevant HPV types at Day 1, and (iv) had a valid month 7 serology result collected in the appropriate day range. Subjects in Phase B were included in the analysis if they: (i) received the first 2 vaccinations in the appropriate day ranges, (ii) had serology samples collected in appropriate day ranges, and (iii) were seronegative to the relevant HPV types at Day 1.

Results at both the month 3 (postdose 2) and month 7 (postdose 3) time-points by treatment group for subjects in Phase A (15 and 30 mcg IMX, +MAA) and at the month 3 time-point for subjects in Phase B (60 and 120 meg IMX, +MAA) are displayed in FIGS. 3 and 4, respectively. The results demonstrate an IMX dose-related enhancement of the immune response to relevant HPV types compared to that of GARDASIL®, which is adjuvanted with MAA alone.

Example 4 Stability of Octavalent HPV MAA and Solution Formulations in the Presence and Absence of ISCOMATRIX® (IMX)

Four different octavalent HPV samples, ±MAA and ±IMX, were formulated. All formulations contained HPV VLPs in the following amounts: 40 μg/mL HPV 6, 80 μg/mL HPV 11, 80 μg/mL HPV 16, and 40 μg/mL each of HPV 18, 31, 45, 52, and 58 VLPs. Also included in each of the formulations was 0.32 M NaCl, 10 mM Histidine pH 6.2 and 0.01% polysorbate 80 (PS80). The first formulation contained no IMX or MAA adjuvant. The second formulation contained 240 m/mL IMX and no MAA. The third formulation that was tested contained no IMX and 562.5 μg/mL (1.25×) MAA. The fourth formulation that was tested contained both 240 μg/mL IMX and 562.5 μg/mL (1.25×) MAA.

These four formulations were analyzed by SDS-PAGE for HPV VLP integrity and in vitro relative potency assay (IVRP) for in-vitro antigenicity after being stored for 6 months at 4° C. and 37° C. Results from SDS-PAGE analyses (EXAMPLE 5) as well as IVRP assays (EXAMPLE 6) indicated that HPV VLPs are not stable without MAA, and IMX has no impact on HPV VLP stability in the presence of MAA. Results demonstrate that MAA should be included in IMX-containing HPV vaccine formulations.

Example 5 Evaluation of HPV VLP Integrity by SDS-PAGE

Samples were analyzed by SDS-PAGE with Invitrogen 4-20% or 14%, 1.5 mm, 10 well Tris-Glycine gels. Samples are prepared in a reducing sample buffer (0.25M Tris PH 6.8, 8% SDS, 40% Glycerol, 0.008% Bromophenol blue, dithiothreitol, and heated at 70° C. for 10 minutes). The samples containing aluminum adjuvant were concentrated to 762 μg/mL prior to sample preparation, and 0.5M EDTA, pH 8.0 was included to dissolve the aluminum.

The high load was added to a 1× reducing sample buffer (portions of one 4× reducing sample buffer: three MilliQ water) to prepare a low load (2.5 μg). A 12 mcg (high) and a 2.5 mcg (low) load were run for each sample.

After electrophoresis, gels were fixed using a 12% (w/v) trichloroacetic acid solution and stained with a Pro-Blue Colloidal Coomassie Blue Stain. Band patterns were acquired using a densitometer and analyzed using ImageQuant software (GE Healthcare Biosciences; Piscataway, N.J. The high load was used to determine the relative amounts of degradants and the low load was used to determine the relative amount of intact HPV.

Results indicated that there was a small decrease (less than 10%) in % intact monomer for both of the plus-MAA samples (±IMX) stored at 37° C. after 6 months (FIG. 5). However, there were much larger decreases in % intact monomer for both of the minus-MAA samples at the same time point and storage, to 69% for the minus-IMX sample and to 39% for the plus-IMX sample. The data demonstrate that in the presence of IMX, HPV VLPs are more stable in MAA formulation than in solution formulation.

Example 6 Evaluation of In Vitro Antigenicity of HPV VLPs by IVRP Assay

The potencies of HPV types 6, 11, 16, 18, 31, 45, and 52 VLP samples were quantified relative to a reference standard by in vitro relative potency (IVRP) testing. The IVRP assay is a sandwich-type immunoassay that uses separate monoclonal antibodies for capture and detection.

The antibodies used in each of the eight serotype-specific assays were prepared by Strategic BioSolutions (Newark, Del.). The following serotype-specific capture antibodies were used in the IVRP assay: H6.M48 mAb (IgG1) for HPV6, K11.B2 mAb (IgG1) for HPV11, H16.J4 mAb (IgG2a) for HPV 16, H18.J4 mAb (IgG2a) for HPV 18, H31.5F12.D4 mAb (IgG1) for HPV31, H45.6G6.A8 mAb (IgG2b) for HPV45, H52.8D11.C4 mAb (IgG2b) for HPV52, and H58.2; C3.F7 mAb (IgG1) for HPV 58. The following serotype-specific detection antibodies were used in the assay: H6.B10.5 mAb (IgG2a) for HPV6, H11.B2 mAb (IgG2b) for HPV11, H16.V5 mAb (IgG2b) for HPV16, H18.R5 mAb (IgG2b) for HPV18, M31.5D10.E4 mAb (IgG2b) for HPV31, H45.10B4.H4 mAb (IgG1) for HPV45, H52.9F7.E10 mAb (IgG2a) for HPV52, and H58.6E11.F4 mAb (IgG2b) for HPV58.

The assay was carried out on a Tecan Freedom EVO workstation (Tecan USA; Research Triangle, NC) using white FluoroNunc MaxiSorp 96-well microtiter plates (Fisher Scientific; Pittsburgh, Pa.). Assay plates were first coated with the capture antibody (100 μL/well), in 1 M ammonium sulfate buffered with 10 mM Tris, pH 8, and then allowed to incubate for 16-24 hrs at 2-8° C. Following the incubation, the plates were washed with Tris-buffered Saline (MS) containing 0.05% Tween 20 and then blocked with 200 μL/well of assay diluent (TBS containing 0.05% Tween 20 and 1% bovine serum albumin) for one hour. Prior to sample addition, adjuvant-adsorbed samples and standards were diluted 5-fold in 6% citrate phosphate buffer (pH 6.7-6.8) containing 1 M NaCl and 0.04% Tween 80 and incubated for 2+0.5 hrs at ambient temperature on a nutator for adjuvant dissolution. Samples that were not adsorbed to adjuvant were also diluted in the dissolution buffer but were not incubated. Each sample and reference standard was then diluted to a serotype-specific target concentration with assay diluent in a Nunc 96-well polypropylene microtiter plate from Fisher Scientific (Pittsburgh, Pa.). From this initial dilution, eleven two-fold serial dilutions were prepared for each sample and for the reference standard in the assay plate. After a 12-20 hour incubation at room temperature with shaking, the plates were washed and 100 μL of the detection antibody was subsequently added to each well. The plate was incubated for one hour at room temperature and again washed.

Next, 100 μL of rat anti-mouse monoclonal antibody (IgG1, IgG2a, or IgG2b) conjugated to alkaline-phosphatase was added to each well, supplied from Southern Biotechnology (Birmingham, Ala.) or BD Pharmingen (BD Biosciences; San Jose, Calif.). After a one-hour incubation at room temperature, the plate was washed to remove any unbound conjugate. Next, 100 μL of 4-methylumbelliferyl phosphate (4-MUP) substrate solution from ViroLabs (SuperPhos; Chantilly, Va.) was added and allowed to react for one hour.

The fluorescence of each well was measured by reading the plate in a Tecan Ultra Evolution 384 plate reader (Tecan USA; Research Triangle, NC) at an excitation wavelength of 360 nm and an emission wavelength of 450 nm. The resulting fluorescence intensity was plotted relative to the dilution factor and the data was analyzed using a four-parameter logistic model:

y = D + ( A - D ) 1 + ( X C ) 2

where X is the sample dilution, y is the measured fluorescence response, A is the asymptotic maximum, B is the slope, C is the ED50 (i.e. the theoretical dilution that produces a response equal to 50% of the maximum response) and D is the asymptotic minimum. The same asymptotic maximum and minimum were applied to both the standard and the sample, and the ED50 and the slope for each sample and standard were iteratively adjusted until the root mean square error was minimized. Once the optimal ED50 and slope for each individual sample and standard were identified, a test for parallelism was applied to the sample. If the sample slope was within 20% of the reference standard slope, the test sample were considered parallel to the standard, and the data was reanalyzed using a common slope model. A common slope, asymptotic maximum and asymptotic minimum were applied to both the sample and the standard, and the sample and standard ED50's were independently optimized to minimize the root mean square error. The final IVRP was calculated using the following equation:


IVRP=(ED50sample/ED50standard)×Reference Standard Potency

The results were subsequently normalized by dividing by the protein concentration, thus producing the IVRP-to-protein ratio. The IVRP-to-protein ratio provides a measure of the functional epitopes per unit of mass.

The results indicate that all eight types of HPV antigens retained 100% antigenicity after being stored at 4° C. for 6 months in both of the plus- and minus-MAA samples regardless of the presence and absence of IMX (see FIG. 6). The antigenicities of all HPV types in both of the minus-MAA formulations (±IMX) remained only 10% after 6-months at 37° C. However, each HPV type in both of the plus-MAA formulations (±IMX) was still above 75% active, suggesting that HPV VLPs in the absence of MAA were not stable. The IVRP results are comparable with the SDS-PAGE date, indicating that MAA is needed in the IMX-based HPV formulation.

Development of HPV Formulations Comprising Preservatives: Example 7 Evaluation of the Effectiveness of Anti-Microbial Preservatives

The effectiveness of various preservatives in candidate HPV vaccine formulations was evaluated using an antimicrobial test (anti-microbial effectiveness (AME) test). AME testing was used to determine the ability of a preservative to reduce or eliminate microbes that may be introduced into the vial following product withdrawal. For description of the assay, see United States Pharmacopoeia (USP) <51>, European Pharmacopoeia 5.1.3, and Meyer et al. J. Pharm. Sci. 96(12):3155-3167 (2007), which is herein incorporated by reference. Briefly, the AME test comprises the EPA, EPB and USP criteria, which consist of inoculating 105-106 CFU/mL microorganisms (e.g., bacteria and fungi) per container at time zero, and evaluating the log reduction over time (Meyer et al., supra).

The initial preservative screening was conducted using the following seven preservatives: benzyl alcohol, chlorobutanol (plus EtOH), m-cresol, methylparaben, propylparaben, phenol, and 2-phenoxyethanol in various doses and combinations. These preservatives have been used as anti-microbial preservatives in commercial parenteral products. Thimerosal was also included as a reference.

The initial doses and combinations of the preservatives were selected based on previous work and available literature. More specifically, concentrations were tested ranging from 0.5-1.2% benzyl alcohol; 0.25-0.5% chlorobutanol (0.5% EtOH or 3.0% EtOH); 0.15-0.3% m-cresol; 0.045-0.18% methylparaben; 0.005-0.02% propylparaben; 0.25-0.5% phenol; 0.25-0.5% 2-phenoxyethanol; and 0.002-0.01% thimerosal. All samples contained 562.5 mcg/mL MAA, 0.32 M NaCl, 10 mM H is, 0.01% polysorbate-80 (PS-80), pH 6.2. Formulations containing chlorobutanol and propylparaben were tested with and without the addition of 120 mcg/mL ISCOMATRIX®.

Benzyl alcohol, phenol, 2-phenoxyethanol, and m-cresol were provided as solutions and were added directly to the HPV formulations. Chlorobutanol was provided in a powder and was dissolved in 100% ethanol to make a stock solution. Thimerosal was dissolved in USP water to make a stock solution. The combination of methylparaben and propylparaben were made by weighing out each powder and making a stock solution in 100% ethanol. The pH of the solution was adjusted with a target pH of 6.2.

Preservatives were added to octavalent HPV formulations comprising 8 types of HPV VLPs, as described in EXAMPLE 1, and were stored for one week at 2-8° C. prior to AME testing. Formulations containing 1.2% benzyl alcohol, 0.5% chlorobutanol, and 0.3% m-cresol passed the USP, EP-B, and EP-A criteria of the AME test (See Meyer et al., supra). Formulations containing 0.4% and 0.5% phenol passed USP and EP-B, but not EP-A tests. Additional preservative-containing formulations were tested that only passed the USP test. Therefore, formulations containing 1.2% benzyl alcohol, 0.5% chlorobutanol, 0.3% m-cresol, and phenol at a concentration of 0.4% or 0.5% were selected for further evaluation.

Example 8 Evaluation of the Impact of Preservatives on the Structural Stability of HPV VLP Antigens

Differential Scanning Calorimetry (DSC) was used to evaluate the impact of preservatives on protein structural and thermal stability. The analysis for antigen thermal stability was determined using a VP-Capillary DSC Platform (MicroCal, LLC, Northampton, Mass.). A detailed description of the conditions utilized is disclosed in Ionescu et al. (2007) (J. Pharm. Sci. 97(4): 1414-1426 (2008)).

HPV 18 VLPs were chosen as the model HPV antigen for DSC analysis because this type of VLP gives the most robust DSC signals and represents a less stable type of VLP compared to other types tested. The DSC evaluation was carried out in the presence of various preservatives with varied concentrations. The results indicate that 0.5% chlorobutanol, 0.15% m-cresol, 0.25% phenol, 0.5% ethanol (solvent for chlorobutanol), and 0.25% 2-phenoxyethanol had the least impact on the thermal stability of HPV type 18 (data not shown). The greatest impact on the thermal stability was observed with thimerosal, 1.2% benzyl alcohol, and 0.045/0.005 methylparaben. However, because the 1.2% benzyl alcohol formulation passed EP-A (EXAMPLE 7) and also had a high biacore response (EXAMPLE 9), it was still selected for further stability testing (EXAMPLEs 11-12). Also, although higher concentrations of m-cresol (0.3%) and phenol (0.5%) had a relatively greater impact on the thermal stability when compared to lower concentrations of these preservatives, the higher concentrations were selected for further evaluation due to passing EP-A (0.3% m-cresol) and EP-B (0.5% phenol) (see EXAMPLE 7). The preservative 2-phenoxyethanol was not considered for further evaluation because it did not pass EP-B or EP-A (see EXAMPLE 7).

Example 9 Impact of Preservatives on the Activity of HPV VLP Antigens

The in vitro antigenicity of HPV vaccine formulations comprising HPV 18 VLPs and different preservatives was evaluated using a neutralization antibody binding assay (Biacore, Surface Plasmon Resonance). The analysis for antigen bioactivity was determined using the Biacore 2000 (VPR 332) and Biacore 3000 (VPR 696) (Biacore, Inc., Piscataway, N.J.). The conditions utilized were as described in Mach et al. (J. Pharm. Sci. 95: 2195-2206 (2006)), with modifications.

Samples were incubated for 2 months at 2-8° C. prior to sample treatment by aluminum dissolution, followed by the final Biacore analysis. The Biacore results indicated that the preservatives tested had no significant impact on the bioactivity of HPV Type 18 VLPs (data not shown). All results were within the variability of the assay (+1-15% maximum) with the exception of methylparaben/propylparaben (77% average relative in vitro antigenicity, n=2) and thimerosal (80% average relative in vitro antigenicity, n=2).

Example 10 Interaction of Preservatives with Aluminum and IMX, Glass Vials, and Stoppers

Analysis of preservative stability was performed using reverse phase (RP)-high pressure liquid chromatography (HPLC), as described in Dunn et al. (J. Pharm Sci 72: 277-80 (1983)). This method was used to evaluate possible interactions of preservatives with aluminum adjuvants, glass containers, and stoppers.

The results showed that there was no detectable loss of the preservatives after contacting the aluminum adjuvant (data not shown). These results were consistent with our previous studies, which demonstrated that the preservatives tested do not bind to MAA. These studies also demonstrated that IMX does not affect preservative concentration or HPV stability.

Similar studies were performed with glass vials (data not shown) and stoppers. The compatibility of the preservatives with Teflon-coated stoppers (FluoroTec®, West Pharmaceutical Services, Inc., Lionville, Pa.) was assessed with four different preservatives in HPV formulation buffer. The formulations tested included final concentrations of 1.2% benzyl alcohol, 0.5% phenol, 0.5% chlorobutanol, or 0.3% m-cresol. Each sample was filled at a volume of 0.75 mL into two 3 mL glass vials with FluoroTec®-coated stoppers. The vials were stored at room temperature for 6 months with one vial inverted and another upright. The concentrations of the preservatives were measured using the RP-HPLC method described above.

The results indicate that no preservative loss was detected after 6 months of storage at room temperature for those samples in contact with the stoppers. These results demonstrate that the preservatives do not interact with or adsorb to FluorTec®-coated stoppers in HPV formulation buffer.

The RP-HPLC method was also used for evaluating preservative stability in HPV vaccine formulations. A short-term preliminary study showed that the selected preservatives were fairly stable when the HPV vaccine was stored at 2-8° C. (data not shown). More detailed evaluations with long-term stability studies are described in EXAMPLE 11-12.

Example 11 Evaluation of Stability of HPV Vaccine Formulations: Materials and Methods

Based on the initial data obtained from AME, DSC, and Biacore analyses (EXAMPLES 7-9), five preservative-containing formulations (1.2% and 0.9% benzyl alcohol, 0.5% chlorobutanol, 0.3% m-cresol, and 0.5% phenol) were selected for further analysis in long-term stability studies. Several HPV vaccine formulations with various dose and combinations of preservatives, in the presence or absence of IMX adjuvant, were tested.

Each type of HPV VLP aqueous bulk was absorbed on MAA separately with a protein-to-adjuvant ratio of 0.71 to form the monovalent vaccines in 0.32 M NaCl, 10 mM Histidine (pH 6.2), 0.01% (w/v) PS-80. The eight individual monovalent vaccines were then blended together to obtain protein concentrations of 40, 80, 80, 40, 40, 40, 40 and 40 mcg/mL for HPV Types 6, 11, 16, 18, 31, 45, 52, and 58, respectively. This combination formed the octavalent vaccine.

In addition, some formulations contained Isocomatrix® (IMX, CSL Ltd., Parkville, Australia) adjuvant. Stock IMX was prepared in HPV vaccine buffer (described above). IMX was then added to the octavalent vaccine to a final concentration of 240 mcg/mL using a settle-decant procedure to form the octavalent HPV vaccine containing IMX adjuvant. The formulations were gently mixed and stored at 4° C. overnight. The initial preservative screening (EXAMPLE 7) used 120 mcg/mL IMX in the chlorobutanol formulation because the final IMX concentration had not been determined when these experiments were performed.

The formulations were filled at a volume of 0.75 mL in 3 mL glass vials with Teflon-coated stoppers (FluoroTec®, West Pharmaceuticals, Lionville, Pa.) and stored in controlled thermal units at 2-8, 25, 30, and 37° C. prior to testing. The formulation and fill processes were performed under aseptic conditions. For the formulations stored at 2-8° C., the measurements are scheduled to be at 0, 8, 12, 24, and 36 months for preservative, HPV VLP, and IMX adjuvant testing.

Example 12 Evaluation of Stability of HPV Vaccine Formulations: Preservative Effectiveness by AME Testing

Formulations from the real-time study (2-8° C.) were first evaluated at time 0 for preservative effectiveness using AME testing. The formulations containing 0.5% chlorobutanol and 0.3% m-cresol in the presence or absence of IMX passed the USP, EP-B and EP-A tests. The formulation containing 1.2% benzyl alcohol without IMX passed USP, EP-B, and EP-A, but did not pass EP-A in the IMX-containing formulation. Formulations that did not pass EP-A in the presence or absence of IMX also included 0.9% benzyl alcohol and 0.5% phenol. 3.3.3. Stability Data for 8 Months Storage at 2-8° C. and 3 Months at 30 and 37° C.

The stability of multi-dose, preservative-containing samples was evaluated using in vitro antigenicity (Biacore) for HPV VLPs, and RP-HPLC for preservative and IMX stability.

The data from the accelerated stability studies (FIGS. 7 and 8) indicated that all preservatives had a negative impact on the stability of octavalent HPV vaccines at 30 and/or 37° C. However, when the formulations were stored at 2-8° C., the preservatives showed no significant impact on HPV vaccine stability even after 8 months of storage (FIGS. 7 and 8). The data also show that the effect of preservatives on HPV vaccine varies with preservative type. The results of the accelerated stability studies at 30° C. indicated that comparing all preservatives tested, 0.3% m-cresol was the most optimal preservative with the minimum impact on the stability of the multi-dose HPV vaccine, while the 1.2% benzyl alcohol and 0.5% chlorobutanol preservatives had the most impact on HPV vaccine stability. Overall, only three preservatives (0.9% benzyl alcohol, 0.5% phenol, and 0.3% m-cresol) had relatively less impact on HPV vaccine stability.

Example 13 Evaluation of Stability of Preservatives in HPV Vaccine Formulations by RP-HPLC Assay

The stability of preservatives in the multi-dose HPV vaccine was monitored by RP-HPLC analysis as previously described (EXAMPLE 10). The results demonstrate that all five preservatives were stable in the multi-dose vaccine formulations in the presence or absence of IMX (FIG. 9). No preservative loss was observed for all formulations tested during this study regardless of storage temperature or duration.

1-27. (canceled) 28. A human papillomavirus (HPV) vaccine composition comprising HPV virus-like particles (VLPs) of HPV types 6, 11, 16, 18, 31, 45, 52, and 58 and an aluminum adjuvant, wherein the HPV VLPs are adsorbed onto said aluminum adjuvant. 29. The HPV vaccine composition of claim 28, further comprising VLPs of at least one additional HPV type. 30. The HPV vaccine composition of claim 29, wherein the at least one additional HPV type is selected from the group consisting of HPV26, HPV33, HPV35, HPV39, HPV51, HPV53, HPV55, HPV56, HPV59, HPV66, HPV68, HPV73, and HPV82. 31. A human papillomavirus (HPV) vaccine composition consisting of HPV virus-like particles (VLPs) of HPV types 6, 11, 16, 18, 31, 45, 52, 58 and one additional HPV type and an aluminum adjuvant, wherein the HPV VLPs are adsorbed onto said aluminum adjuvant and wherein the one additional HPV type is selected from the group consisting of: HPV26, HPV33, HPV35, HPV39, HPV51, HPV53, HPV55, HPV56, HPV59, HPV66, HPV68, HPV73, and HPV82.


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